Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02383 ATGGAATCCGGGGTGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAACTCATCTGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGAGTGCTACCGCTTCCACCTCTCGCAATCTCTATGAATCCAAGAAAAGGCCAAACATCAACGTGTCTGTGTCCTCGAGTGATTCTGGATCAAGCGACGAGTTGCTGATGCCTCCTGGTAGAAGGCTTGGTCCCGAGACCATTCGAGTTTGCAATGGTTTGGCTGCCTCTGAGCGAGGTGGGAGTGAAATTAGTCGGAAGAGGGATAGAGTGGAACGAATAAGCGGTAGTGGGGAGGACATTGCTGCGGAGAAAGGTTTGGAGCAGTGGGAAAGGAAGCGTAGTAAGTTGGATGTGTACGATTTCAATGAATACGATGGCATGGATGTGGAGAACATAAGGAGGAGGCATTTGGATGGTCATGGGGGAGGAAGGTTTATGGGATCAGTGCATGCTGCTAGAAGTGGCATTGATAGGGATTTCAGAACAGGGTCAAGTGGACGTGTTCTCGATAAGAGAAAGAACTCCTACGGTGACAAGCCTAATTGCTTGTATCCAGGGGATAATGTGGGTCACAGTAGGTTCAAAATGAACAAGGATGGAGCTCAGGTGCCTCCACTCTCACAGAGGGAGAAGTTTAATTCGGACGAGTCCATTAGGGTTCAGGGGAAGAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGTCCATCAGAACAGTATTATGATCATCACAAACCCTTGGAAAGCAGGCTAaggttgaagactgaagagatggctaagaggttgaagactgaagaggctgccaagaggttgaagactgaggggacttccaagaggAATATTCCAATTCGTCCTTCCTCATACATCGATAAGAAACCTGTTGATAAACCAGCATTACATAAGAGGCCAGAGAAGAAAAGGATAGCATCAAGAAAATCATTGTCAAGCAAGGATAGTAAGGGTGATGAGGGGGATTCAGATAACAGTGACACATCATTGAATCCAAGAATAAGAAATACTGAAGCTCGTAAGTCTGTGAAAAAAATAATCTCTGAGGATGAGCAGACTCCTGTGCACCAAAAAACCCCAACCACAAGAACAAAAGAAGGAAAACTCAAGCGTGGTAGTGGTACAGAAAAACAAAAACTGCGGGAACAAATAAGGGAGATGCTGCTGAATTCAGGTTGGACGATAGACTATCGACCTCGGAGGAACAGAGACTACCTGGATGCTGTTTACATTAATCCAGCTGGTACAGCCTATTGGTCTATCATCAAGGCCTATGATGCTCTTCAAAAGCAATTGAATGATGATGCTGATGAGGTCAAGCCCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTTCTCAGTCAGTTAACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGCAAAAGAAGAAGAAAAGGCATGATAGTGAAAGTGATAGTGAAAAAGAGCCTCAAAGGAAAAGATCTGCCAGCAACAAGCATAATATGAATAGCATGGATAGTGATAGCTACGAGGAGAAATTAAGCTCCTTTATAAAACAGGGAAATAAGTCAATGAAAAACAAAATGTTTGAAAATACCTCTATCAGTGCTCGCTCTAAAATCCAGAATGCTACCCATCACTCAAGTGATGGAATAGAAAAATCATTATTTGGATGTGATCCTCATATACATGGACGGAAGAGTAAAAAACATGGAAGATGTACTTTGTTAGTTCGCAGTTCTAACAAAGGATCAAATTCAGAATCTGATGGCTTTGTTCCATATACGGGCAAGCGGACAGTTCTTGCCTGGTTAATAGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCATGCTGGAGGGGTGGATCACAAGAGACGGCATTCACTGTGGCTGCTGTAGTAAGATCCTCACTGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAGCCACATCACAATATATATTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGCATGCTGAAAAAATTGGTTTCCATTCAGTGGATATTGATGGAAATGATCCAAATGATGATACTTGTGGTATTTGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGCTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGGAACTTCTGATAAAGATGATGCATCTGTGAATATCCTACAGACTTGCATCTTATGTGAGAAAAAATATCACAACTCTTGCACTAAGGAGATGAATACCCTTCCTAATAAAATCAATTCATCAAGCCTTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTCGGAACACTTGAAGAAATACCTTGGTACCAAACATGAACTAGAAGCAGGTTTTTCATGGTGTCTCATTCATAGATTAGATGAAGACTCAGAGGCAGCTTGCAGGGGACTTACCCAGAGGGTAGAATGCAATTCCAAGTTGGCCATTGCACTGACTGTGATGGATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAATGTTTTATATAATAGTGGATCAAACTtTAGTCGGTTCCATGGAACTAAGATTGCAGAGATGCCATTCATTGGAACACGCCATATATATAGGCGCCAGGGGATGTGCCGCCGACTTTTTTCTGCCATTGAATTGGCCCTTTGCTCTCTGAAGGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACACATACATGGACAACAGTTTTTGGCTTCACATATCTAGATGAATCACTCAGGCAAGAAATGAAGTCACTGAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGTTAGTGGAACAAGGAAACCGTGAAGGTTCTGAGAAAATGGAAAATGGAAACAACGATTTTATCAAGACCAAAATGGGAAATAGGTCAGATATGGGTTTTTCAACTCCACAAGGTCCTCGTGGAAGTGATGATGTTAGTTCAAATCCTGCTAATGAGACAAATGATGAATGCAGCGATGCTTCTCAAGAACTATACAACCAAGTTTTGGTTGATGGGATTATCTGTTCCCAATCTCATTCTGAGGAAATGATGTCTGATCCAATTTCAGATAAATGTGATTCTCCTTCTAGAACTAGTCACAGTGAACTAGAAATGAAGAATAAAGTAGCGGCTGCTCCTCCTGTCGATAGATTAGATTCTTCTACCAAATGTCAATCCATTTATCCAATTGACAGTCACCCAGTAGATATTCTGAAAGTTCAAGCTTTGGTTCAGGAAACTGCTTGTTCTGATCCATGTCCAGCAGAAGAAAACCTTGACAAGAAGTGTCACTCATCCACTGCCATGAATTGTGATTCATCGGAGCTTGACATTAATCCAGTGTTGGATTCTGAAATGGCAGACAATACTCTGCCTACTAAAGAGGTTTGTATGAATGATGTTCTTGAAGTTGTTCCTTCCGGGAATATATCTGAAGATAATATTACAAAGGGGAATAATCGAAATGTAGATGAATCCAGTTCTGCTCTCAATCATGCTGATGAGAGTTTATTCCAAGTAGGATCTGATTCCAACGGTGAAATTGGGTGTGAGAATGAAAAGGATTTACTTTTAAACCCGGGAGTTGCTTCAAATGAAACAGATTTTGATGAAAGTGGCGTAAATGCTTCCGGTGATAGTTCCGAGACTGTCATAGTCTAA 3852 0.4076 MESGVRSGGSGVVVKSRNSSGCLIVRKKGDGLSATASTSRNLYESKKRPNINVSVSSSDSGSSDELLMPPGRRLGPETIRVCNGLAASERGGSEISRKRDRVERISGSGEDIAAEKGLEQWERKRSKLDVYDFNEYDGMDVENIRRRHLDGHGGGRFMGSVHAARSGIDRDFRTGSSGRVLDKRKNSYGDKPNCLYPGDNVGHSRFKMNKDGAQVPPLSQREKFNSDESIRVQGKNGVLKVMVNKKKVGGPSEQYYDHHKPLESRLRLKTEEMAKRLKTEEAAKRLKTEGTSKRNIPIRPSSYIDKKPVDKPALHKRPEKKRIASRKSLSSKDSKGDEGDSDNSDTSLNPRIRNTEARKSVKKIISEDEQTPVHQKTPTTRTKEGKLKRGSGTEKQKLREQIREMLLNSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDADEVKPKGDSSSFAPIADEVLSQLTRKTRKKMEKELQKKKKRHDSESDSEKEPQRKRSASNKHNMNSMDSDSYEEKLSSFIKQGNKSMKNKMFENTSISARSKIQNATHHSSDGIEKSLFGCDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYTGKRTVLAWLIDSGTVELSQKVQYRRRKKVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPHHNIYLESGVSLLQCQIDAWNRQEHAEKIGFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGIASGTSDKDDASVNILQTCILCEKKYHNSCTKEMNTLPNKINSSSLSFCGKECKELSEHLKKYLGTKHELEAGFSWCLIHRLDEDSEAACRGLTQRVECNSKLAIALTVMDECFLPVIDRRSGINLIRNVLYNSGSNFSRFHGTKIAEMPFIGTRHIYRRQGMCRRLFSAIELALCSLKVEKLVIPAIAELTHTWTTVFGFTYLDESLRQEMKSLNMMVFPGIDMLQKLLVEQGNREGSEKMENGNNDFIKTKMGNRSDMGFSTPQGPRGSDDVSSNPANETNDECSDASQELYNQVLVDGIICSQSHSEEMMSDPISDKCDSPSRTSHSELEMKNKVAAAPPVDRLDSSTKCQSIYPIDSHPVDILKVQALVQETACSDPCPAEENLDKKCHSSTAMNCDSSELDINPVLDSEMADNTLPTKEVCMNDVLEVVPSGNISEDNITKGNNRNVDESSSALNHADESLFQVGSDSNGEIGCENEKDLLLNPGVASNETDFDESGVNASGDSSETVIV 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02383 1283 MobiDBLite consensus disorder prediction 324 344 - -
Gma01g02383 1283 SMART PHD_3 764 822 IPR001965 -
Gma01g02383 1283 SMART PHD_3 722 763 IPR001965 -
Gma01g02383 1283 Coils Coil 475 502 - -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 1004 1056 - -
Gma01g02383 1283 SUPERFAMILY FYVE/PHD zinc finger 708 765 IPR011011 -
Gma01g02383 1283 Pfam PHD-finger 723 765 IPR019787 -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 277 395 - -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 32 64 - -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 277 292 - -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 28 77 - -
Gma01g02383 1283 ProSiteProfiles Zinc finger PHD-type profile. 720 765 IPR019787 -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 477 531 - -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 1261 1283 - -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 1017 1056 - -
Gma01g02383 1283 CDD PHD2_CHD_II 723 762 - -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 1262 1283 - -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 513 531 - -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 355 370 - -
Gma01g02383 1283 ProSitePatterns Zinc finger PHD-type signature. 723 762 IPR019786 -
Gma01g02383 1283 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 908 1188 - -
Gma01g02383 1283 Pfam Tify domain binding domain 645 695 IPR032308 -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 1079 1098 - -
Gma01g02383 1283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 712 837 IPR013083 -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 1081 1098 - -
Gma01g02383 1283 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 908 - -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 379 395 - -
Gma01g02383 1283 PANTHER PHD FINGER FAMILY PROTEIN 908 1188 - -
Gma01g02383 1283 PANTHER PHD FINGER FAMILY PROTEIN 1 908 - -
Gma01g02383 1283 MobiDBLite consensus disorder prediction 491 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02383 Gma-Chr1 58620394 58627606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02383 4 1020 PHD Transcription Factor Family AT4G14920 48.224 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma01g02383 TDBD 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02383 - - gmx:102666194 2501.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02383 01 58620394 58627606 Gma11g00047 11 401951 408802 GST