Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02382 ATGGAATCCGGCTTGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAACTCATCTGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGGGTGCTACTGCTTCCACCTCTCGCAAGCTCTATGAATCCAAGAAAAGGCCAAACATCAACGTGTCATTGAGTGATTCTGGATCAAGCGAGGGGTCACTAATACCTCCTGGTAGAAGGCTTGGTCCCGAGACTATTCGAGTTTGCAATGGTTTGGCTGCCTCTGAGCGGGGTGGGACTGAAATTAGTCGAAAGAGGGATAGAGTACAACGAATTAAAGGTAATGGGGAGGGTATTGCTGCGGAGAAAGGGTTGGAGCAGTGGGAAAGAAAGCGTAGTAAGTTGGGTGTGTACGATTTTGATGATTACGATGGCATGGATTTGGAGAACATGAGGAGGAGGCATTTGGATGGTCATGGAGGAGGAAGCTTTATGGGATCAGTGCATGCTGCTAGAAGTGGCATTGATAGGGAATTCATAACAGGTTCAAGTGTACGAATTCTTGATAAGAGAAAGAACTCTTACGGTGACAGACCTAGTGGCTTGTATCTGGGAGATAATGTTGATCACAGTAGGTACAAGATAAACAGGGATGGAGTCTGGGTACCTCTACGCTTGCAGAGGGAAAAGTTTAATTCAGATGAGTCGATTAGGGTTCAGGGGAAGAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGTCCATCAGAACAGGATTATGATCATCACAAACCTGTGGAAGGCAGGCAAaggttgaagactgaagagactgctaagaggttgatgactgaagagactgccaagaggttgatgactgaagagactgccaagaggttgaagactgaagaggctgccaagaggAATGTTCCAATTCGTCCTTTGTCATACTTGGAAACAAAACCTGTTGAGAAACCAGGATTACTCAAGAGGCCAGAGAATAAAAGGATAGCATCAAGAAAATCGTTGTCAAGCAAGGACAGTAAGGGCGATGAGGGGGATTCAGATAACAGTGACACATCATTGAATTTGGGAATAAGAAATACTGAAGCACGGAAGCCAGCAAAAAATGTAATGTCTGAGGATGAGCAGACTCCTGTGCATGAAAAACTCCCAACCACAAGAACAAAAGAAGGAAAAATCAAGCGTGGAAGTGGTACAGAAAAACAGAAACTGCGGGAACGAATAAGGGAGATGCTGCTGAATTCAGGTTGGACCATAGACTATCGACCTAGAAGGAACAGGGACTATCTGGATGCAGTTTACATTAATCCAGCAGGTACAGCTTATTGGTCTATCATCAAGGCCTACGAAGCACTTCAAAAGCAATTGAATGAAGATGCTAATGAGGCCAAGCCCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTCAATCAGCTAACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAAAAGAAGAAAAAATATGATAGTGAAAGTGATAATGAAAAAGAGCCTCAAATAAGATCTGCCAGCAACAAGCGTGATTTGAATAGCACAGATGGTGATAACAATGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGGAGTAAGTCAATGAAAAATAAAATGTTTGAAGATACCATTATGAGTGCTTCCTCTAAAATCCAGAATGCTACCAATCACTCAGGTGATGGAATAGAAAAATCATTATTTGAATGTGATCCTCAGATACACGGACGGAAGAGTAAAAAACATGGAAGATGTACCTTGTTAGTTCGCAGTTCTAAGAAAGGATCAAATTCAGAATCTGATGGCTTTGTACCATATATGGGCAAACGAACGGTTCTTTCATGGTTGATTGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCATGCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCACGCAGGAAGCAAATTGCCACAGCCATATCAAAATATATATTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGAGGCATGGAATAGACAAGAGCATTCTGAAAAAATATGTTTCCATTCAGTGGATATTGATGGCGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCCACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCTGGGTGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGGAAATTCTGAAAAAGATGATGCATCTGTGTATGTCCTACAAATTTGCAACTTATGTGAGAAAAAATATCATGACTCTTGCACTAAGGAGATGGATAACCTACCTAATAACATCAATACATCAAGCCTTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTCTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAGCTGGAAGCCGGTTTTTCATGGTCTCTCATTCATAGGATAGATGAAGACTCAGAGGCAGCTTGCAGGGGTATTAGCCAGAGGGTAGAATGCAATTCCAAGTTGGCTATTGCACTGACTGTGATGGATGAATGTTTTTTACCTGTTATTGATCGAAGGAGTGGGATCAATTTAATCCGTAACGTTTTATATAATAGTGGATCAAACTTTAGTCGGTTGAACTATAGTGGCTTTTACACTGCTACTTTGGAGAGAGGGGATGAAATCATTGCTTCAGCATCTATCAGGTTCCATGGAACTCAGATAGCAGAGATGCCATTTATCGGAACTCGCCATATGTATAGGCGTCAGGGGATGTGCCGCCGGCTTTTTTCTGCCATTGAATCGACACTTTGCTCTCTGAAGGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACAAATACATGGACAACAGTTTTTGGCTTCACACATCTGGACGAATCACTCAGGCAAGAAATGAAGTCACTGAATATGATGGTCTTCCCCGGTATAGATATGTTAATGAAGCCGTTAGCGGAACAAGGAAACCATGAGGGTTCTGAGAAATTGGAAAATGGAGACAATGATTTTATCAAGACCAAAATGGAAAATAAGTCAGATATGGGTTCTTCAACTCCACAAGATCCTCATGGAAGTGATGATATTAGTTCAAGTCTTGCTAATGAGATGAATGATGAATGCAGTGACGCTTCTCAAGAACTAAACAACCAAGTTTTGGTTGATGGCATTATCTGTTCCAAATCTCATTCTGGGGAAATGATGTCTGATCCAGTTTCAGATAAATGTATTTCTCCTTCTAGAACTAGTCACAGTGAACTAGAAATGAAGAATAAAGTAGTGGCTGCTCCTCCTGTCGATAGATTAAATTCTTCTGCCAAATGTCAATCCATTTCTCCGATTGACACTTCTGTTAGTAGTCACCCAGTAGATATTCTGAAAGTTTTGGTTCAGGAAACTACTTGTTCTGATCCATGTCCAGCAGAAGAAAATCTTGACAAGAAGTGTCACTCGTCCACTGCTATGAATTGTGATTCATCGGAGCTTGACATTAATCCAGTGTTGGATTCTGAAATGGCGAACAATACTCTGCCTACTAAAGAGGTTTGTATGAATGACACTCTTGAAGTTGTTCCTTCAGGAAATATATCTGAAGAGAATATTATAAAGGGAAATAATCGAAATGTAGGTGAATCCAGTTCTGCTCTCAATCATGCTGATGAAAGTTTGTTGCAAGTAGGATCTGTTTCCAACGGTGAAATTGGATGTGAGAATGAAAAGGATTTACGTTTGAACCCAATAGTTGCTTCAAATGAAATGTATTTTGATGAAAGTGGCATAAATGCTTTCGGTGATAGTTCCGAGACTGTTCTGGTCTAA 3945 0.399 MESGLRSGGSGVVVKSRNSSGCLIVRKKGDGLGATASTSRKLYESKKRPNINVSLSDSGSSEGSLIPPGRRLGPETIRVCNGLAASERGGTEISRKRDRVQRIKGNGEGIAAEKGLEQWERKRSKLGVYDFDDYDGMDLENMRRRHLDGHGGGSFMGSVHAARSGIDREFITGSSVRILDKRKNSYGDRPSGLYLGDNVDHSRYKINRDGVWVPLRLQREKFNSDESIRVQGKNGVLKVMVNKKKVGGPSEQDYDHHKPVEGRQRLKTEETAKRLMTEETAKRLMTEETAKRLKTEEAAKRNVPIRPLSYLETKPVEKPGLLKRPENKRIASRKSLSSKDSKGDEGDSDNSDTSLNLGIRNTEARKPAKNVMSEDEQTPVHEKLPTTRTKEGKIKRGSGTEKQKLRERIREMLLNSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYEALQKQLNEDANEAKPKGDSSSFAPIADEVLNQLTRKTRKKMEKELKKKKKYDSESDNEKEPQIRSASNKRDLNSTDGDNNEEKLSSFIKQGSKSMKNKMFEDTIMSASSKIQNATNHSGDGIEKSLFECDPQIHGRKSKKHGRCTLLVRSSKKGSNSESDGFVPYMGKRTVLSWLIDSGTVELSQKVQYRRRKKVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIEAWNRQEHSEKICFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPLGEWHCPNCTCKFCGIASGNSEKDDASVYVLQICNLCEKKYHDSCTKEMDNLPNNINTSSLSFCGKECKELSEHLKKYLGTKHELEAGFSWSLIHRIDEDSEAACRGISQRVECNSKLAIALTVMDECFLPVIDRRSGINLIRNVLYNSGSNFSRLNYSGFYTATLERGDEIIASASIRFHGTQIAEMPFIGTRHMYRRQGMCRRLFSAIESTLCSLKVEKLVIPAIAELTNTWTTVFGFTHLDESLRQEMKSLNMMVFPGIDMLMKPLAEQGNHEGSEKLENGDNDFIKTKMENKSDMGSSTPQDPHGSDDISSSLANEMNDECSDASQELNNQVLVDGIICSKSHSGEMMSDPVSDKCISPSRTSHSELEMKNKVVAAPPVDRLNSSAKCQSISPIDTSVSSHPVDILKVLVQETTCSDPCPAEENLDKKCHSSTAMNCDSSELDINPVLDSEMANNTLPTKEVCMNDTLEVVPSGNISEENIIKGNNRNVGESSSALNHADESLLQVGSVSNGEIGCENEKDLRLNPIVASNEMYFDESGINAFGDSSETVLV 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02382 1314 ProSitePatterns Zinc finger PHD-type signature. 728 767 IPR019786 -
Gma01g02382 1314 SMART PHD_3 727 768 IPR001965 -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 497 517 - -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 484 533 - -
Gma01g02382 1314 PANTHER PHD FINGER FAMILY PROTEIN 1 1206 - -
Gma01g02382 1314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 716 809 IPR013083 -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 316 403 - -
Gma01g02382 1314 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 915 987 IPR016181 -
Gma01g02382 1314 CDD NAT_SF 924 982 - -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 367 403 - -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 49 63 - -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 246 267 - -
Gma01g02382 1314 ProSiteProfiles Zinc finger PHD-type profile. 725 770 IPR019787 -
Gma01g02382 1314 Pfam Tify domain binding domain 650 701 IPR032308 -
Gma01g02382 1314 SUPERFAMILY FYVE/PHD zinc finger 716 773 IPR011011 -
Gma01g02382 1314 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1206 - -
Gma01g02382 1314 CDD PHD2_CHD_II 728 767 - -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 1053 1085 - -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 248 267 - -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 518 533 - -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 317 349 - -
Gma01g02382 1314 Pfam PHD-finger 728 770 IPR019787 -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 32 72 - -
Gma01g02382 1314 MobiDBLite consensus disorder prediction 1052 1085 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02382 Gma-Chr1 58611466 58618481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02382 4 1049 PHD Transcription Factor Family AT4G14920 50.047 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma01g02382 TDBD 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02382 - - gmx:100814247 2547.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02382 01 58611466 58618481 Gma11g00048 11 410703 417918 GST