Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02340 ATGGTTAGTATTATTAGTACCAACAATCAATGTAACCCCTCACATATTTCACACGGGGGTGGAGGAGGTGCAATTGGGGTGAGAGGCCTCGATGAAGATGATGATGATGATGTTGGAAAGAATGAAGAAGAAAACAAGTGGCCACCATGGCTTGGGCCACTTCTCCAAACAAGCTTCTTTGTTCAATGCAAAGTCCATGCAGATTCCCACAAAAGTGAATGCAACATGTATTGCTTGGACTGTATGAATGGAGCCCTTTGCTCTACCTGTCTTGCTTCTCACAGAGAACACAGAGCTATTCAGATTAGGAGATCTTCATACCATGATGTAATAAGAGTGTCGGAGATACAGAAATTTCTGGACATAACAGGGGTCCAAACTTACATTATAAACAGTGCCAAGATTGTGTTCTTGAATGAAAGGCCTCAACCTAGGCCTGGCAAAGGAGTTACCAACACCTGCCAAGTCTGTGAGCGCAGCCTTCTCGATTCATTCAGCTTCTGTTCCCTTGGTTGTAAGATAGTAGGAACCTCCAAGAAGTTCCGGAAGAAGAAAATGTTAGCTGAGACAGATGGGTCCGATGGTGAAGAATCAATAAATGGCATTAGCAATGAAAGTGGAAGAAACAAAATCCATAGCTTCACGCCGTCAACACCACCACCAACAGTGGTAAATTACAGGACTGCTAAGAGGAGAAAGGGAGTCCCACATAGAGCTCCAATGGGTGGTGACTTAACAAACAATAATTACACCGTGAAAGATACAACAGTTGTTGCCAGTGCCACTTCCCTAAGTGGCAATATGGCATCATTGGACAATATATGCCTTGTAAAAGTTACAATACCAGAGCCACTGTTCATTGAGGCCGGTGTTGGGAACTGCTTCACTATCTTAAACTTCTCCCCACTATTCCTCCCCCGACTTGTCGCAACACTACGCATTCTCTTGAGGCAGTTCCGGGGTAGGTTAAGCGACTCTTTGGTGGTTGAGGTTAAACACCCCGAGTTGTGCGTCGAGTTTTTCTTGTGGGCGAGTCGCCAAATCGGTTACGCCCACCCTCCAGTGGTGTACACTGCACTAATTGAGTTACTGTGTTGCAATGGCGATAATGATAGAGTGTCTGACAAGTTCTTGATGCAAATCAGGGATGATGACTGGGAGCTGCTTCGCAGGTTGCTCAATGTTCTCATTCAAAAGTGTTGCAGGATTGGGATGTGGAATGTGGCAATGGAAGAGTTGGGGAGGCTCAAGGATTTTGGCTACAAGGCTTCTCCCACCACTTATAATGCTTTGATTCAGGTTTTTCTTAGGGCTGATAAGTTAGATACTGCTTATTTGGTTCATAGAGAGATGTTGAATTCTGGGTTTGGTATGGATGGGTATACTTTGAGTTGTTTTGGCTATTCCCTCTGTAAAGCGGGGATGCGCTGA 1431 0.4486 MVSIISTNNQCNPSHISHGGGGGAIGVRGLDEDDDDDVGKNEEENKWPPWLGPLLQTSFFVQCKVHADSHKSECNMYCLDCMNGALCSTCLASHREHRAIQIRRSSYHDVIRVSEIQKFLDITGVQTYIINSAKIVFLNERPQPRPGKGVTNTCQVCERSLLDSFSFCSLGCKIVGTSKKFRKKKMLAETDGSDGEESINGISNESGRNKIHSFTPSTPPPTVVNYRTAKRRKGVPHRAPMGGDLTNNNYTVKDTTVVASATSLSGNMASLDNICLVKVTIPEPLFIEAGVGNCFTILNFSPLFLPRLVATLRILLRQFRGRLSDSLVVEVKHPELCVEFFLWASRQIGYAHPPVVYTALIELLCCNGDNDRVSDKFLMQIRDDDWELLRRLLNVLIQKCCRIGMWNVAMEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAYLVHREMLNSGFGMDGYTLSCFGYSLCKAGMR 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02340 476 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 37 244 - -
Gma01g02340 476 TIGRFAM PPR: pentatricopeptide repeat domain 427 459 IPR002885 -
Gma01g02340 476 MobiDBLite consensus disorder prediction 1 16 - -
Gma01g02340 476 Pfam PPR repeat 427 456 IPR002885 -
Gma01g02340 476 MobiDBLite consensus disorder prediction 1 43 - -
Gma01g02340 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Gma01g02340 476 MobiDBLite consensus disorder prediction 189 224 - -
Gma01g02340 476 Pfam PLATZ transcription factor 103 174 IPR006734 -
Gma01g02340 476 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 37 244 - -
Gma01g02340 476 MobiDBLite consensus disorder prediction 196 224 - -
Gma01g02340 476 Gene3D Tetratricopeptide repeat domain 310 475 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02340 Gma-Chr1 58355226 58360560 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Gma01g02340 PLATZ 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02340 - - gmx:100796834 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02340 01 58355226 58360560 Gma11g00077 11 623381 625952 GST