Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02335 ATGATGAGAACACCAATTGCAAGCAATGATGAAAGTGGTTTGAAGAAGGGGCCTTGGAGCCCAGAAGAGGACAAAATATTAGTGGATTTCATTGAGAAACATGGCCATGGAAGTTGGAGAGCCCTTCCAAGGCTTGCAGGCTTAAACAGGTGTGGAAAGAGTTGCAGACTAAGGTGGACTAATTACCTCAGGCCTGATATCAAACGCGGAAAATTCTCTGACGAAGAAGAGCAACTCATCATCAATTTACATTCAGCTCTCGGGAATAAGTGGGCGGCTATAGCATCTCATCTACCAGGGAGGACTGATAATGAAATAAAGAATTTGTGGAACACCCATTTAAAGAAAAAGCTAATGCAAATGGGGTTAGACCCAGTGACTCACCGTCCAAGAACTGATAACCTAAACCTTCTTAGCAATCTACAACAGATATTGGCAGCTGCTAAAATTGTGAGCAGTTTGACGAACCCATCTGCTCTAAGCTGGCTACAGTCAGATGCCACACTCCAATTATTGCAAAACATGTATGCTAGGCCTACTGCCTCTAACTCAGACCCACTGATCAATCCTTTTCGAACATTAAACTCACTGCCAGATTCTTATTCTTTGCTAAATGATCTTTTGGGTTTCAATCTTCACTCTAATCTCCAAAACCTTTATGATGGTAATTCGCTTTCTCAAATCCAGCCCAATTTCCAAAACTTTGAGGCCCCTCAGCAGCCAACGCAGCACTTGAATGGTGGCAGAAATACTAGTTTCAGGGAATCGCAAAAGCAATTTGGTTCCACAAATAATATTGCTGACCCTTCACTATCGAGTTCGCTTCCAAATCTGGTTTCTGCCTCACCTGAACGTTCCCCATTCAAGGAAGCTGAAAACATTATGGTAAACTCAAAGGACTGTTCCACCTCCTTTGAGTTAACGTGGGGTGATTTCATGGATGAAGAAACAACCGAAACTTATTGGAAAGGTTTCATAGATCGACCAACATTCTAA 996 0.4237 MMRTPIASNDESGLKKGPWSPEEDKILVDFIEKHGHGSWRALPRLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHSALGNKWAAIASHLPGRTDNEIKNLWNTHLKKKLMQMGLDPVTHRPRTDNLNLLSNLQQILAAAKIVSSLTNPSALSWLQSDATLQLLQNMYARPTASNSDPLINPFRTLNSLPDSYSLLNDLLGFNLHSNLQNLYDGNSLSQIQPNFQNFEAPQQPTQHLNGGRNTSFRESQKQFGSTNNIADPSLSSSLPNLVSASPERSPFKEAENIMVNSKDCSTSFELTWGDFMDEETTETYWKGFIDRPTF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02335 331 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Gma01g02335 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Gma01g02335 331 MobiDBLite consensus disorder prediction 260 283 - -
Gma01g02335 331 MobiDBLite consensus disorder prediction 1 20 - -
Gma01g02335 331 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Gma01g02335 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Gma01g02335 331 PANTHER MYB TRANSCRIPTION FACTOR 2 329 - -
Gma01g02335 331 CDD SANT 71 114 IPR001005 -
Gma01g02335 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 329 - -
Gma01g02335 331 CDD SANT 18 63 IPR001005 -
Gma01g02335 331 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Gma01g02335 331 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gma01g02335 331 Gene3D - 15 68 - -
Gma01g02335 331 MobiDBLite consensus disorder prediction 260 281 - -
Gma01g02335 331 SMART sant 68 116 IPR001005 -
Gma01g02335 331 SMART sant 15 65 IPR001005 -
Gma01g02335 331 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gma01g02335 331 Gene3D - 71 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02335 Gma-Chr1 58315496 58317201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02335 1 327 MYB Transcription Factor Family AT5G16770 45.763 2.18e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma01g02335 Myb_DNA-binding 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02335 K09422 - gmx:102660452 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02335 01 58315496 58317201 Gma11g00082 11 660590 662394 GST