Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02331 ATGGAGGGAGCATCGTGGAATAGTAGTGTTTGTGTGGCACCGTTTCTGAGCAAGACCTACGACATGGTTGATGATCCTTCCACCGACTTAGTGGTGTCGTGGGGCGAAAACAACAACTCCTTTGTTGTTTGGAACGTTCCCCAATTCGCCACAGACATCTTGCCCAATCATTTTAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTGAATACTTATGGTTTTAGAAAGGTTGACCCAGATCGATGGGAATTTGCAAATGAAGGATTTTTAAGAGGTGAAAAACAACTTTTAAAAAGTATCAGTAGGCGGAAATCTGCTCATGTAAATGGTAGTCAACAAGCATCTCAAGTGCATAAATCAGCTGCTGGAGCATGTGTTGAAGTGGGGAAATTTGGGCTTGAGGAAGAGGTGGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTGAGACAGAAACAGCAAGGGACTGATAACCAATTGCAAAATGTTGGGCAACGTGTGCAGTCAATGGAGCAGCGTCAGCAGCAAATGATGTCATTCCTGGCTAAGGCCATGCAGAGCCCAGGCTTCTTAGCTCAATTTGTTCAGCAGCAGAATGAAAGTAGTAAACATATCCCTGGGAGCAATAAAAAGAGGAGGCTCCAGCGACAAGAAGAAGATAGTTTAGCCACCAAGGATCTCCATAGTTCTCTTGATGGACACATTGTCAAGTACCAGAGTTCCATAAATGAGGCTGCAAAAGCATTATTTCGCCAGATATTGCAAATAAACAATTCTACAACACAATCATCAATTAAGAACCCTGATGTTTTCCTTATTGATGATATTCCTTCTGCCATTGCATCAGATAGCAGTAGTTCATCCACTCAGGTTTCTAATGTGATGGTTCCACCTATATCTGAGCTGACGTCTATGGAAGTAGGATCACAGTTTCCTCTCAGTTGTATGCCCAGTAACATATCTGAGGTGCAGTCTTCACCTGCTGTTTTGGGTTTCTGTAGAAGTCAGGGGATGGAGACAGAAAGCAGTTTATTGAATCATGAGCTGAATGTTATGGGGGCTGATACTAGGAACATGGGGGAGATAGATATGATGTCAACTGTTTTAGATGAGGCAGACGAAGCTGATCATTTTTCACCTGACACAGATGGAATTTCTAAACTCCCAGAAATCAGTGATGAATTCTGGGAACTGTTTTTAAGGCCAAGCCCACTTACAGAAGACACAGAGGAAACTAAATGTAGCTCTCTAGGATGTGGTTTGACTGAAGATCAGGGTTTGCCTTCAGAAATGGGAAATAAGCAGGAAAATTTTGATACAATACAACATGTTGACTGTCTTACTCAACAGATGGGACTTCATGCATTGGAGTACTGA 1395 0.4237 MEGASWNSSVCVAPFLSKTYDMVDDPSTDLVVSWGENNNSFVVWNVPQFATDILPNHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGEKQLLKSISRRKSAHVNGSQQASQVHKSAAGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQKQQGTDNQLQNVGQRVQSMEQRQQQMMSFLAKAMQSPGFLAQFVQQQNESSKHIPGSNKKRRLQRQEEDSLATKDLHSSLDGHIVKYQSSINEAAKALFRQILQINNSTTQSSIKNPDVFLIDDIPSAIASDSSSSSTQVSNVMVPPISELTSMEVGSQFPLSCMPSNISEVQSSPAVLGFCRSQGMETESSLLNHELNVMGADTRNMGEIDMMSTVLDEADEADHFSPDTDGISKLPEISDEFWELFLRPSPLTEDTEETKCSSLGCGLTEDQGLPSEMGNKQENFDTIQHVDCLTQQMGLHALEY 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02331 464 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g02331 464 Coils Coil 131 158 - -
Gma01g02331 464 MobiDBLite consensus disorder prediction 211 232 - -
Gma01g02331 464 MobiDBLite consensus disorder prediction 202 232 - -
Gma01g02331 464 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g02331 464 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g02331 464 SUPERFAMILY "Winged helix" DNA-binding domain 12 104 IPR036390 -
Gma01g02331 464 Gene3D - 8 105 IPR036388 -
Gma01g02331 464 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g02331 464 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g02331 464 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g02331 464 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 9 440 - -
Gma01g02331 464 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 440 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02331 Gma-Chr1 58280376 58284016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02331 12 463 HSF AT5G16820 51.836 1.48e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma01g02331 HSF_DNA-bind 3.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02331 K09419 - gmx:100793665 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02331 01 58280376 58284016 Gma10g02308 10 50692946 50695578 PCT
Gma01g02331 01 58280376 58284016 Gma20g01405 20 41159093 41160733 PCT
Gma10g02308 10 50692946 50695578 Gma01g02331 01 58280376 58284016 PCT
Gma20g01405 20 41159093 41160733 Gma01g02331 01 58280376 58284016 PCT