Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02295 atggagagttcggggttaggtccagtggattgcgacgttggatcgattgtttgggttcgaagaaggaacggttcgtggtggccgggtcaaatacttggccccgatcacctttctgcttctcatcttacttctcctcgttcaggaactcccgttaagcttctcggaagggaagatgccagcgtagattggtacaatttggagaaatccaagcgcgtgaaggcattccgatgtggtgaatttgatggatgtattgaaagggcggagtccgcccagggtatgccattaaagaaaagagagaaatatgcacgcagagaagatgccattcttcatgctcttgatctcgagaggcaaatgttaaagacgcaagaaaaaataggattggggcaagttggtgtagcacaccaagtaaagaggaggaaatttgtttatctgccagaagagtctagtgattctatggattacaaggagattcctgtcaatgttgccatgtcagcttcccaatttggaggggagtatgcttattgcagctctttggctgaagagagtgaatctgcttttatggatgttgttgaatctgattctcttgaaactggttctgctaatgctgattctgattcctctgaaatggaacttgacaaggatgatgagatgactactctttcagAAACTGGTTGCGATACTGAAGAACAAGAAAGCACTAGCAGTGAGGAACTTGATGAGTTGGCAATTTCTAGAGACATGCCTCACCTCTATCCTCGTCCGCATATATCATGCAATGAAGCTGTATCCAAATGGAAGTTAAAAGGAAAAAGGAATAATCGTAATCTTGTAAAAAGGTCTGTTGGTGCTGCTGATGGGAAAGGTGTTGTTTTATATGAAACAGATGTTGAAGGATTAAGAAGCCGTTTAAATCACAAGAGGTTGGTGCCTAGTATGCATTATTATGGGAATGGTATTAGTGATGTTTTTGCTGACACCGATCAAATGTTTGGGTTTGAAGATGAATATTCTCCAACTTCCAAAGCACTAGCAAAAGGTCAAAATAAAATTGGTCATggtgttgattgtgatgaatgggcttgggaggatcagactgcttttaaaggatattgggaaaataaagggtttgctcgattatataGTGATAGTTATCATTTTGATGGAAGGATGAGGTCAATGCTGGTAGATGTGGACTTGAAGGTTCAAGCAAGCTATCGGAAAGCACCTGTCCCCATTGTTTCTATCACTAGTAAGTTAGATGGGAAGTCAATAATAGGGCACCCAATCCAAATTGAATCCCTTAAGGATGGTTCATCGGATAAACTTTTTTCTGCAATTGATGACTTTAGTAACGATGGGAATGGCTTTGAGGGAAGTAGTGTACTTCCACCAGCCTGGAGGACTGCAAGGAGAACAGCAAATTTTCGTGTTCCTCGTCCCCGTGTATTGTCATCTAATGGTGCTGATAGTGATGCGGATTTCTGCATTGGTCAAGAAAGAAATATTGAGTATAAGAAATTAAATGGTGGAAGTTCCAGTCATAAGGCAAGCCTTTCCAGGAAGAGTGGCCTTAACAGTCCTGTGCATTCGGTAGACAAGAAGTCCTCAAAAAAGATGCCAAAGAAAGCACTCAAGCGTCGCAAGGAGAAAGCTATGGATGAGGGAAAGCATAAATCGAGGAAAGAAAATCATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGTGACCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAACGATGGGAGGCACAGAGATAGGGAGAAGAGGGATCGTGAGTCCCGAAGACCTGAGAGAGAGAGGAGTACTGATTCTGAAGACAGGTATGATAGAGACAGGGAGAAGCGCAAAGATAAAGATAAGGATGTGGACCGAGAAAGAAGTCGAGATAAGAAAAGGGAAAGGGATAGGACAGACAGAGTAAGGGAGAAAGAAagagagagggaaagaaaagaagataaggagaggatcagagagagggaaagggaaagggaaaggagggatcatgagagagagaaggaaaaggaaagAGAAAGGGGGAGGAGAGTACGAGGGAGGGAGAAGCGTAGGGAAGTTGATAGTGATTGCAGTGATGGTGAATCTAAGGAGCAGGACAGAAAGCGGCATAGGAAAGAGGATGGTGATTACAAGAGAGAGAGGGAAAGGAGTGTCAGCAAGCCAAGCAGGAAATCTGAGGAACATGAAGGAAGCCCAAGAAAAAAGAGTGGCGAAGATGATTCAGATACCAAAGATGAAGAGAAAAAACCTACCCGTGAAGAGGAGATGGAGGATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGGAGGAAGAAGGAAGAAGCAGAAAGAGAAAAACAAGGTGAAGCAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGACTGGGTACTGGGAAGCAGACAGGTATGGATGTAGATGAAGATGACAAACCTGCTGATGAGGAGCCTAAGGATGTGATGGTGGTAGATACTGATAATGGGACAATTGCATCTGATTTACAGGATGGAACTGCTGGTGCTCCTGAAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTAAACAATGCTGTGACATCGTCACTTTCTGATAAAGCCATTGATGTAAAACCCAAGGATAAAGGGAATGGGCAAAATCGTGGTGCACAGTCAAGGAAAGGTTCAAATAAGTCTATTGGCAGAATAATTCCtggtgaagagtctgactcagattatgcagatgatgaagttgagaaggatccattggatgaagatgatgatgagttcatgaaAAGAGTGAAGAAGACAAAAGCCGAGAAGCTTTCTTTAGTTGACCACTCAAAGATCGACTATGAACCATTCAAGAAAAACTTTTATATTGAAGTGAAGGAGATCTCAAAGATGACTCCTGAAGAAGCTGCAGTATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCAATAAAATCATGGCACCAGACTGGACTTCCTAGCAAAATTTTGGAGACCATAAAGAAGATGAACTTTGAAATGCCGATGCCTATTCAAGCTCAGGCGCTCCCTGTAATCATGAGTGGTCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCCGGAGATGGACCTATTGGGCTCATTATGGCCCCTACAAGGGAACTTGTGCAACAGATTCACAGTGATATAAAGAAATTTGCCAAGGTACTGGGTCTCAGGTGTGTGCCTGTGTATGGAGGATCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTAGTGGAAAAATAACTAACTTGCGTAGAGTCACTTATCTGGTAATGGATGAGGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACACGAATTGTTCAGAATATTCGTCCAGATCGTCAAACAGTTCTGTTCTCTGCGACTTTCCCCCGTCAGGTTGAAATCCTGGCTCGTAAGGTCTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGCGTTGTGAACAAAGACATAACACAGCTAGTTGAGGTGAGGCCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTATGAGAAAGGAAAGATTTTGATATTTGTTCACTCACAGGAGAAATGTGATAGTTTGTTCAAAGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGACCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACCAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACCGGACGAGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAACTATCTGAGCAGATTGTTCCGAATGATCTGAAAGCTCTTGCTGGTAGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCTCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCACAAGCCAAGGAGTATGGGTTTGAAGAAGAAAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCATTCTGCTTTTGCCCAGATTATTGCTGCCACTAAAGGGAATGCTCCTGCATTGCCTACTCCAATACTCCTACCATCCTTGCAAGTCTTGCCTGGGACAGGGCTACCTCTTCCTGCAAACGATGGGGCAGCTCGAGCAGCAGCAATAGCTGCTCTAAACTTGCAGGACAAGTTAGATAAAATACGATCAGAAGCATTACCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAGGTTACACACAAGGAAACTTTGGGCCCTATTTCTGAATGGAGTGGAGCTGCCATTACCACTAGGGGGCAGTTTTTCCCACCTGGCAAAATCCCAGGACCTGGGGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACTGAGCACTCCGTTAAGTCAGCTAAAGCAGACTTGAAGCGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGAACTCAACCGGGCAAATACTCTGTTGTGTAA 4968 0.3547 MESSGLGPVDCDVGSIVWVRRRNGSWWPGQILGPDHLSASHLTSPRSGTPVKLLGREDASVDWYNLEKSKRVKAFRCGEFDGCIERAESAQGMPLKKREKYARREDAILHALDLERQMLKTQEKIGLGQVGVAHQVKRRKFVYLPEESSDSMDYKEIPVNVAMSASQFGGEYAYCSSLAEESESAFMDVVESDSLETGSANADSDSSEMELDKDDEMTTLSETGCDTEEQESTSSEELDELAISRDMPHLYPRPHISCNEAVSKWKLKGKRNNRNLVKRSVGAADGKGVVLYETDVEGLRSRLNHKRLVPSMHYYGNGISDVFADTDQMFGFEDEYSPTSKALAKGQNKIGHGVDCDEWAWEDQTAFKGYWENKGFARLYSDSYHFDGRMRSMLVDVDLKVQASYRKAPVPIVSITSKLDGKSIIGHPIQIESLKDGSSDKLFSAIDDFSNDGNGFEGSSVLPPAWRTARRTANFRVPRPRVLSSNGADSDADFCIGQERNIEYKKLNGGSSSHKASLSRKSGLNSPVHSVDKKSSKKMPKKALKRRKEKAMDEGKHKSRKENHEVKDGDSKRSHRDRDRTGERGKDKNDGRHRDREKRDRESRRPERERSTDSEDRYDRDREKRKDKDKDVDRERSRDKKRERDRTDRVREKERERERKEDKERIRERERERERRDHEREKEKERERGRRVRGREKRREVDSDCSDGESKEQDRKRHRKEDGDYKRERERSVSKPSRKSEEHEGSPRKKSGEDDSDTKDEEKKPTREEEMEDEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKQGEASANEPESGKTWTLEGESDDEEGLGTGKQTGMDVDEDDKPADEEPKDVMVVDTDNGTIASDLQDGTAGAPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSDKAIDVKPKDKGNGQNRGAQSRKGSNKSIGRIIPGEESDSDYADDEVEKDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKNFYIEVKEISKMTPEEAAVYRKQLELKIHGKDVPKPIKSWHQTGLPSKILETIKKMNFEMPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQIVPNDLKALAGSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEEKSDSEDEDEGIRKAGGDISQHSAFAQIIAATKGNAPALPTPILLPSLQVLPGTGLPLPANDGAARAAAIAALNLQDKLDKIRSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWSGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEHSVKSAKADLKRVLEDITNQALQLPGGTQPGKYSVV 1655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02295 1655 Pfam PWWP domain 14 94 IPR000313 -
Gma01g02295 1655 Coils Coil 650 688 - -
Gma01g02295 1655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1182 1415 IPR027417 -
Gma01g02295 1655 MobiDBLite consensus disorder prediction 506 884 - -
Gma01g02295 1655 ProSiteProfiles PWWP domain profile. 13 68 IPR000313 -
Gma01g02295 1655 SUPERFAMILY Tudor/PWWP/MBT 12 116 - -
Gma01g02295 1655 MobiDBLite consensus disorder prediction 506 530 - -
Gma01g02295 1655 MobiDBLite consensus disorder prediction 193 215 - -
Gma01g02295 1655 MobiDBLite consensus disorder prediction 950 965 - -
Gma01g02295 1655 Gene3D - 1246 1419 IPR027417 -
Gma01g02295 1655 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1272 1416 IPR001650 -
Gma01g02295 1655 SMART helicmild6 1296 1377 IPR001650 -
Gma01g02295 1655 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 1035 1063 IPR014014 GO:0003724
Gma01g02295 1655 Coils Coil 768 812 - -
Gma01g02295 1655 Pfam DEAD/DEAH box helicase 1060 1231 IPR011545 GO:0003676|GO:0005524
Gma01g02295 1655 CDD SF2_C_DEAD 1256 1386 - -
Gma01g02295 1655 MobiDBLite consensus disorder prediction 546 812 - -
Gma01g02295 1655 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 1190 1198 IPR000629 -
Gma01g02295 1655 SMART ultradead3 1054 1259 IPR014001 -
Gma01g02295 1655 Gene3D - 987 1245 IPR027417 -
Gma01g02295 1655 MobiDBLite consensus disorder prediction 908 969 - -
Gma01g02295 1655 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 707 1490 - -
Gma01g02295 1655 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1066 1244 IPR014001 -
Gma01g02295 1655 MobiDBLite consensus disorder prediction 821 844 - -
Gma01g02295 1655 CDD DEADc_DDX46 1024 1245 - -
Gma01g02295 1655 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 707 1490 - -
Gma01g02295 1655 MobiDBLite consensus disorder prediction 1451 1465 - -
Gma01g02295 1655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1246 IPR027417 -
Gma01g02295 1655 MobiDBLite consensus disorder prediction 1451 1480 - -
Gma01g02295 1655 Pfam Helicase conserved C-terminal domain 1269 1377 IPR001650 -
Gma01g02295 1655 Gene3D - 7 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02295 Gma-Chr1 58050429 58061738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02295 1022 1397 Eukaryotic Initiation Factors Gene Family AT3G19760 31.842 6.77e-57 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02295 K12811 - gmx:100784306 1839.7