Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02286 ATGAAGCTGAAGACATATGCGGGTCTTAGTATCATTGCAACTCTGGCTATTATATATCATGCGTTTAACAGTAGGGGCCAGTTTTATCCCGCAATGGTGTATCTGTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAATATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGGTGTTCCTGGGTTCCCTCCGAGAGGCAGAGGTTGAGAGGCTTAACGAGCAATCCTGGAGGGAGGTTATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAGGACTTCTCTGTCACATTCCTTGCAATGGTCACAGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTCGAGTACATTGAGACCACTCCTTCGGTTCCCATGTTGTCCCATGTTCGAATTGTATCTTTTATGGGCTTCCTTCTTCTTCTTGATAGCCTTTTCTTATACAGTTCTATGAAGCATTTGATAGAAACTTGGCAGGCTTCGGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACTACAACGGTGTCAATTTTTGTAAAATATCTTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACATTTTACCTGGAACTCGTTAGGGACCTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCTTGAAGAACTTAATGCAAGTGATGCAACCTGCATTATTTGTCGTGAAGAGATGACGACGGCCAAGAAACTTGTATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCACACTTGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAACTTCAGCTGCAGGGCAGCAAGGATCACAGTCAGATGCCCATCAACAGGGAACAACTGGGACAGGCAGTGGAAGCACTGCTCAGACTGAGGCTACTGATAGTTTGAGTCGACATCAAGCTAGACTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTGTACCCCTCTATGAATTCTTTTGTATGCTCTCCTGGATACACTCTTCATCCCCCAGTTCAAATATATATGGCTGAATCTTCTGATAAGGACCGTAATGGAGAGCAAACTTCCAGTGAAGAAGCACAAAGGCAGTTTCTTATCGCTGGTAGACCACCAAATCTATCCTTTCCTCCAATGCAAAACTTCCATTTTCTACCTTCCCAAGCACATGCATCCCCTGTGAATTATGGAGAGGGGTTTGAAAATGATCCAAATATCCCAAACTCTCAGCTTGAAGCTTATAGAAAACTTCTTCAATGCCAGATTCAGATTCTGCAAAATCAGCTCGAGATGCTGCAGAGGATAAAGGCTGATAGAAGTGTAGATGAGGGCACGCCATCATCAGATAGCAGAGGCAAGAGTGTCATTTCCTCATCATCTGGATCTGGTCATGGTTATCGTGAGGATATTCGAGATGGAAAAGCATAA 1656 0.4312 MKLKTYAGLSIIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSMKHLIETWQASVSLFFCFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELVRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATLEELNASDATCIICREEMTTAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTSAAGQQGSQSDAHQQGTTGTGSGSTAQTEATDSLSRHQARLQAAAAAASIYEKSYVYPSMNSFVCSPGYTLHPPVQIYMAESSDKDRNGEQTSSEEAQRQFLIAGRPPNLSFPPMQNFHFLPSQAHASPVNYGEGFENDPNIPNSQLEAYRKLLQCQIQILQNQLEMLQRIKADRSVDEGTPSSDSRGKSVISSSSGSGHGYREDIRDGKA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02286 551 CDD RING-H2_synoviolin 288 329 - -
Gma01g02286 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Gma01g02286 551 MobiDBLite consensus disorder prediction 515 551 - -
Gma01g02286 551 Pfam Ring finger domain 290 329 IPR001841 -
Gma01g02286 551 PANTHER RING ZINC FINGER PROTEIN 1 441 - -
Gma01g02286 551 MobiDBLite consensus disorder prediction 523 540 - -
Gma01g02286 551 SUPERFAMILY RING/U-box 271 335 - -
Gma01g02286 551 SMART ring_2 291 328 IPR001841 -
Gma01g02286 551 Coils Coil 484 511 - -
Gma01g02286 551 MobiDBLite consensus disorder prediction 338 376 - -
Gma01g02286 551 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Gma01g02286 551 PANTHER - 1 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02286 Gma-Chr1 57982486 57986764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02286 1 535 C3H Transcription Factor Family AT3G16090 64.378 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02286 K10601 - gmx:100816441 1008.82