Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02275 ATGCAAGGAAGCGCAGCTGACGGTGAAGCCTTGGATTTCGAGCCTGAGGACGATGACTTGATGGACGAGGACGGCGCCCCCGACGCCGACGCTTCTCCGCCTCAACCTAAGCTCAAATCCGCCATCACCGCCGCCGCCGCCCCCAAAAAGACCAAGGGTCGCGGATTCCGGCAGGACACCGACGCCAACCGCGACACTCGCCTCTCCGGCTCCGACTTCGACTCTCTCACCACCGAGGGCGGCCCTGGCCCTCAAAGATCCATTGAAGGATGGATCATTCTGGTCACCGGCGTGCACGAGGAAGCGCAAGAAGACGATTTGCAAAACGCCTTTGGTGAATATGGAGAGATTAAGAACCTGCATTTGAATCTTGATCGCCGCACTGGTTTTGTCAAAGGTTATGCGTTGATTGAATATGAGCGTGCTGAGGAAGCTCGAAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACCCAAACCATTTATGTTGACTGGGCCTTCAGCAGTGGACCTATTAACGAGTCAGTCAGAAGAAAGAATGCTAGACCACCTCGTGAACGGCGTTCCAGGAGCCCCCGGAGGAGATATTGA 594 0.5455 MQGSAADGEALDFEPEDDDLMDEDGAPDADASPPQPKLKSAITAAAAPKKTKGRGFRQDTDANRDTRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESVRRKNARPPRERRSRSPRRRY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02275 197 MobiDBLite consensus disorder prediction 52 68 - -
Gma01g02275 197 Gene3D - 23 183 IPR012677 -
Gma01g02275 197 MobiDBLite consensus disorder prediction 176 197 - -
Gma01g02275 197 PRINTS RNA binding motif protein 8 family signature 45 57 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gma01g02275 197 PRINTS RNA binding motif protein 8 family signature 82 96 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gma01g02275 197 PRINTS RNA binding motif protein 8 family signature 138 154 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gma01g02275 197 PRINTS RNA binding motif protein 8 family signature 156 168 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gma01g02275 197 PANTHER BNAA05G15240D PROTEIN 7 197 - -
Gma01g02275 197 CDD RRM_RBM8 85 172 IPR033744 GO:0003729
Gma01g02275 197 PANTHER RNA-BINDING PROTEIN 8A 7 197 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gma01g02275 197 MobiDBLite consensus disorder prediction 183 197 - -
Gma01g02275 197 MobiDBLite consensus disorder prediction 1 87 - -
Gma01g02275 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 169 IPR000504 GO:0003723
Gma01g02275 197 MobiDBLite consensus disorder prediction 10 26 - -
Gma01g02275 197 SUPERFAMILY RNA-binding domain, RBD 84 195 IPR035979 GO:0003676
Gma01g02275 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 162 IPR000504 GO:0003723
Gma01g02275 197 SMART rrm1_1 92 165 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02275 Gma-Chr1 57910893 57913811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02275 93 167 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 9.82e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02275 K12876 - gmx:100778595 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02275 01 57910893 57913811 Gma11g00139 11 1076697 1079470 GST