Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02252 ATGGAGGGAATGCGAGACAGAAACTCACAGCTTGAACTCCAAGACCAAGAGGGTACTAATATTGGGTCCTCTTTGTCAAAGCTGATATTAACAAGTGGCACAAACACCCTCGATTCAATTTTCTCGAATTGCCCCACAACAACAAATGGCAGCACTAGAAGCAACTCCGTGTTGGATTATTTAGAGCCCTTTGGGTCTTTGGGGTATGAGCCTTTGGGGTCTTCCGTGTACCTCCGCCAAAGGGACATCCTCCAAAAGTTCTACCAAGAAAGCCGAGGAAATGGGTCTTATAATGTTCCCACTTCCTCCTTGAGTAATTCGTTGACGAACCCTTGCAAGAAAAAGCTGTACAGGGGAGTGAGGCAGAGGCACTGGGGCAAATGGGTGGCGGAAATTAGACTCCCACAGAACAGGATGAGAGTGTGGTTGGGAACCTACGACACCGCCGAAGCTGCTGCCTACGCCTACGACCGCGCCGCGTACAAGCTCCGTGGAGAGTACGCGCGTTTGAACTTCCCCAATCTCAAGGACCCCACCAAGCTAGGTTTCGGTGACTCCGCCAGATTGAACGCCTTGAAGTCCTCCGTCGACGCCAAAATTCAAGCCATATGCCAGAAGGTCAAAAGGGAGAGAGCCAAAAAGAATGCCGCCAAGAAGCTTCACAATAGCACTGACCCTAAACGCGGCCAGAGTGAGAAGCCCTCCTCCTCGTCCtcgccgtcgccgtcgccgtcgccgtcgATTTTTAACGATAATTGGGCGAACCAGTTGTTTTCTCCGGCCGTTTCGGAGGATGGGTTTTGGAAGGGGGAGAATTCGCATTCGCCGGCCTCGGTTTTGACCGAGTGTCAAACAGAGGAAACAGAGTTGTTGTTCGAAGGTTGTTCTCTGGCTAGATTGCCTTCCTTCGACCCCGAGTTGATTTGGGAGGTTCTGACCGTTTAA 945 0.4942 MEGMRDRNSQLELQDQEGTNIGSSLSKLILTSGTNTLDSIFSNCPTTTNGSTRSNSVLDYLEPFGSLGYEPLGSSVYLRQRDILQKFYQESRGNGSYNVPTSSLSNSLTNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSARLNALKSSVDAKIQAICQKVKRERAKKNAAKKLHNSTDPKRGQSEKPSSSSSPSPSPSPSIFNDNWANQLFSPAVSEDGFWKGENSHSPASVLTECQTEETELLFEGCSLARLPSFDPELIWEVLTV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02252 314 MobiDBLite consensus disorder prediction 229 250 - -
Gma01g02252 314 Gene3D AP2/ERF domain 116 174 IPR036955 GO:0003700|GO:0006355
Gma01g02252 314 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 313 - -
Gma01g02252 314 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Gma01g02252 314 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Gma01g02252 314 CDD AP2 115 175 IPR001471 GO:0003700|GO:0006355
Gma01g02252 314 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Gma01g02252 314 SUPERFAMILY DNA-binding domain 116 173 IPR016177 GO:0003677
Gma01g02252 314 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 313 - -
Gma01g02252 314 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Gma01g02252 314 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Gma01g02252 314 MobiDBLite consensus disorder prediction 209 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02252 Gma-Chr1 57696784 57698318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02252 19 312 AP2-EREBP Transcription Factor Family AT1G64380 46.567 3.05e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma01g02252 AP2 6.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02252 - - gmx:100785364 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02252 01 57696784 57698318 Gma01g02252 01 57696784 57698318 ECH
Gma01g02252 01 57696784 57698318 Gma11g00164 11 1275910 1277205 GST