Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02250 ATGGAAAGCGACAGGAATTGGGAGCAGAACGCACTCATCAGTGAGCTAATTCAGGGGTTGGAGGTAGCAAGAAAGTTGAAGGAAGACTTGAGTTCAGCCTCTTCGGTTGACGCTAGGGACTCACACTCACTACTGCAGAGGATATTGTCTTCTTATGACAAGGCTTTGCTTTTTCTAAGATGGAATGAATCAGTGTCCATGCAACAACCAACTAAAACTTCTTCACCACAGTCACCACTATCCATTGACAAAACTCCTCTGAGGGAAGACGCTGAAGAAGATCATCAAGAACTTAAACACAATTCGAAGAAAAGaaagatgatgccgaaatggaCGGAACATATTAGAGTGAAGATCGAGAACGGCGTTGAAGGACCCCTCGAAGATGGTTACAGCTGGAGAAAATATGGACAAAAAGATATCCTTAGTGCAAAATATCCCAGAAGCTATTATAGGTGCACCTTCCGCAAAACAAAGGGGTGCTTTGCCACAAAGCAAGTGCAGAGATCAGAAGAAGACCACACTATCTTTGACATAACTTACCGAGGAAGTCACACATGTAAGCGAAACGATGCCGTTCTGCCGCCAAAGTCACCAGATTATACACAAGACGGCTCCTTGACTGTCAAAACGGATAACATAACGGCACCTTCCGCTTCGTTTGGATGCATGGCGCAAGATAACTACCACGACTTATTTCCTTCTTTGGTCTTAGAGAATGATCCATTTTTTAGCACCCTTTCCCAAACATCCTCGTTATCTGCAAACACACCTGAATCAAATTATTTTGTGTCTCCGACTTTCCTCGAACATGAATTCGATGGGGTCTGTAACAAGCCCTGCCCTGATTCTGAACTTGCCCGGCTGGTTTCAGCTGATACATCAATCACCAGTTCTCCAATTTTCGACTTTAATTTCTCGCTCGATGCAGTGGGAATTGATTATCCAAATTTCCCCTTCAATATATGA 969 0.4283 MESDRNWEQNALISELIQGLEVARKLKEDLSSASSVDARDSHSLLQRILSSYDKALLFLRWNESVSMQQPTKTSSPQSPLSIDKTPLREDAEEDHQELKHNSKKRKMMPKWTEHIRVKIENGVEGPLEDGYSWRKYGQKDILSAKYPRSYYRCTFRKTKGCFATKQVQRSEEDHTIFDITYRGSHTCKRNDAVLPPKSPDYTQDGSLTVKTDNITAPSASFGCMAQDNYHDLFPSLVLENDPFFSTLSQTSSLSANTPESNYFVSPTFLEHEFDGVCNKPCPDSELARLVSADTSITSSPIFDFNFSLDAVGIDYPNFPFNI 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02250 322 SUPERFAMILY WRKY DNA-binding domain 126 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma01g02250 322 Pfam WRKY DNA -binding domain 128 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma01g02250 322 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 321 IPR044810 GO:0003700
Gma01g02250 322 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma01g02250 322 MobiDBLite consensus disorder prediction 85 101 - -
Gma01g02250 322 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 321 - -
Gma01g02250 322 MobiDBLite consensus disorder prediction 68 107 - -
Gma01g02250 322 Gene3D WRKY domain 113 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma01g02250 322 ProSiteProfiles WRKY domain profile. 122 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma01g02250 322 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02250 Gma-Chr1 57675046 57677042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02250 6 204 WRKY Transcription Factor Family AT4G23810 46.491 7.78e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma01g02250 WRKY 4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02250 - - gmx:100127370 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02250 01 57675046 57677042 Gma01g02250 01 57675046 57677042 ECH
Gma01g02250 01 57675046 57677042 Gma16g00238 16 2573087 2576271 ECH
Gma01g02250 01 57675046 57677042 Gma07g00537 07 5178644 5181564 ECH
Gma01g02250 01 57675046 57677042 Gma03g02359 03 48760348 48763203 ECH
Gma01g02250 01 57675046 57677042 Gma19g02399 19 52546413 52549172 ECH
Gma01g02250 01 57675046 57677042 Gma05g02103 05 42274814 42276126 PCT
Gma01g02250 01 57675046 57677042 Gma08g00208 08 1800899 1802212 PCT