Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02243 ATGACTGCGCCACCATCCAAGTACACTCACCACTCCAAACTACTCATTCCCTCCGAAGAAGACCCTCCCAAACACCCCTATCCCAGACTCGTCAGAATAACCGTCACAGACACCGAGGCCACAGACTCCTCCAGCGACGAAGAACAGCATACTTCCACGCGCCACCGACACAGAAAGTTCGTCAACGAGATTTCTATCGAGTCGTCGTGCGCCAGCGAGAACGACGGCGCCGCTTCGAGGAAGAGAATTCGAAGAAGAAGCACCGCTACGCCCAAAGGCAGAGCTTCAGACACTCGGCTCGTGTCCAACGGCAAGAAATTCCGCGGAGTGAGACAGCGGCCTTGGGGAAAATGGGCGGCGGAGATACGAGACCCGTCTCGACGCGTTCGTTTATGGTTGGGTACCTACGACACTGCTGAGGAAGCTGCTTTGGTGTACGACAACGCGGCCATTAGGCTGCGTGGACCCCACGCGCTCACCAATTTCATAACACCGCCTGCCACGTGTCACAACACAGACCCTCCGCCGGTGGCGAACGGTTACGGTTACGCTTCCGGTGAGGAAACTAATGACAACAACAATAACCTGTTTTCTCCCACTTCCGTGCTTCACAGTTGTTCCTTGTCCGAGGAAGCTGAGTCCGTAAGGGGAAAAGACGATGAGTACTCCTCCGTGTCGATGAGTAGGGTCAAGGCTGAGTCACCATTTCCGGTTCCGAGCGAAATAGAATTTGACTTTCGAGGTATTTCGCCGGTGCCTGAGAGTGTGTTGTTCTACGATGATGATTGGTCTAGTGAGTTTCTCACTGCTTGTGAGGATTTTGGTTTCAACAGAAATCGTGACTTTTTCCAAGATATCGACGATTTGTTTGTTTCGGATCCCCTCCTTGCTCTCTGA 897 0.5307 MTAPPSKYTHHSKLLIPSEEDPPKHPYPRLVRITVTDTEATDSSSDEEQHTSTRHRHRKFVNEISIESSCASENDGAASRKRIRRRSTATPKGRASDTRLVSNGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIRLRGPHALTNFITPPATCHNTDPPPVANGYGYASGEETNDNNNNLFSPTSVLHSCSLSEEAESVRGKDDEYSSVSMSRVKAESPFPVPSEIEFDFRGISPVPESVLFYDDDWSSEFLTACEDFGFNRNRDFFQDIDDLFVSDPLLAL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02243 298 SUPERFAMILY DNA-binding domain 106 162 IPR016177 GO:0003677
Gma01g02243 298 MobiDBLite consensus disorder prediction 13 27 - -
Gma01g02243 298 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Gma01g02243 298 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Gma01g02243 298 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Gma01g02243 298 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 5 295 - -
Gma01g02243 298 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Gma01g02243 298 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Gma01g02243 298 MobiDBLite consensus disorder prediction 70 98 - -
Gma01g02243 298 MobiDBLite consensus disorder prediction 1 58 - -
Gma01g02243 298 MobiDBLite consensus disorder prediction 43 58 - -
Gma01g02243 298 CDD AP2 105 162 IPR001471 GO:0003700|GO:0006355
Gma01g02243 298 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 295 - -
Gma01g02243 298 MobiDBLite consensus disorder prediction 170 194 - -
Gma01g02243 298 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02243 Gma-Chr1 57609656 57610552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02243 1 298 AP2-EREBP Transcription Factor Family AT4G23750 39.181 1.71e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma01g02243 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02243 - - gmx:100783772 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02243 01 57609656 57610552 Gma01g02243 01 57609656 57610552 ECH
Gma01g02243 01 57609656 57610552 Gma11g00173 11 1340378 1341568 GST
Gma01g02243 01 57609656 57610552 Gma05g02090 05 42194639 42195643 PCT
Gma01g02243 01 57609656 57610552 Gma08g00198 08 1733118 1734352 PCT