Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02242 ATGATGGAACGCATTTTGTGCTTCATCTACTTGGTTTCTCTCATTCTCTTCCAAGCAAATGCAGCAGAGCCCATCTCAGACAAGCAAGCATTGCTTGACTTGTTGGAAAAGTTGCCTCCTTCAAGATCCCTGAATTGGAACGCAAGCTCTTCCCCATGTACCTCCTGGACCGGTGTAACCTGTAATGGAGATAGGTCACGAGTTATAGCCATTCACTTGCCAGGTTTCGGGTTTCACGGAACCATCCCTCCCAACACAATAAGCCGCGTCACGGGGTTGCAAACACTCAGCCTCAGATCCAACTTCATAAATGGTCATTTCCCTTGTGATTTTTCCAATCTCAAAAACCTTTCCTTTCTCTATCTTCAGTATAACAACTTCACGGGTCCCTTACCGGACTTCTCTGCTTGGAGGAACCTCTCTGTTGTCAACTTGTCCAATAATTTTTTCACCGGCACCATTCCTCTCTCGCTCTCCAATTTGGCTCAGCTCACTGCCATGAATCTCGCCAACAACTCGCTCTCTGGGCAAATCCCTGTCTCTCTCCTCCAGAGGTTTCCCAACTCCGCATTCGTTGGAAACAATGTCTCTCTTGAAACCTCTCCTTTAGCTCCATTTTCTAAATCTGCAAAACACGGCGAGGCCACGGTGTTTTGGGTTATTGTTGCTGCTTCTCTTATTGGTCTCGCGGCATTTGTTGGTTTTATCTTTGTGTGCTGGTCGAGAAAGAAGAAGAATGGAGATTCATTTGCTCTGAAGTTGCAAAAGGTAGATATGTCTCCGGAAAAAGTAGTGTCGAGGGACCTGGATGCAAATAATAAAATTGTTTTCTTTGAGGGGTGTAGTTATGCGTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTTTTGGGGAAGGGGACGTTTGGTGCTGCGTATAAGGCTGCGCTGGAGGATGCTACCACTGTTGTTGTGAAGAGGTTGAAGGAGGTGGCTGTTGGAAAGAAGGACTTTGAGCAGCTCATGGAGGTTGTTGGGAATCTTAAACATGAGAATGTTGTTGAGCTGAAGGGGTATTACTATTCCAAAGATGAGAAACTCATGGTATATGATTACTACACTCAGGGGAGTCTCTCTGCTTTGTTGCATGGTAAAAGAGGAGAGGATAGGGTGCCTTTAGATTGGGATACTCGGATGAAAATTGCTTTGGGTGCTGCACGAGGCCTTGCTTGTATTCATTGTGAGAATGGGGGGAAGCTTGTACATGGCAATATCAGATCCTCAAATATCTTTCTCAATAGTAAACAATATGGTTGTGTATCTGATCTTGGCCTGGCAACCATAATGAGTTCAGTTGCCATACCGATCTCGCGAGCCGCTGGTTACAGAGCACCTGAAGTTACAGACACGAGGAAAGCGACTCAACCTTctgatgtttacagctttggtgtggtgttactagagCTTCTCACTGGGAAATCCCCCGTCTACACAACTGGTAGCGATGAGATTGTGCACTTGGTGAGATGGGTTCATTCGGTTGTGAGAGAGGAGTGGACAGCTGAAGTGTTTGACTTAGAGCTGATAAGATATCCCAATATAGAGGAAGAGATGGTGGAAATGTTGCAGATAGCCATGTCATGTGTGGTGAGGGTTCCTGATCAGAGGCCTAAGATGTTAGAACTTGTAAAAATGATAGAAAATGTCAGGCAGATTGAGATAGTAGTGAATCAGCCATCAATATCATCTGAGAACCAAGTGGAAAGTTCAACACAGACCCCTTTAACCACTTAA 1776 0.4448 MMERILCFIYLVSLILFQANAAEPISDKQALLDLLEKLPPSRSLNWNASSSPCTSWTGVTCNGDRSRVIAIHLPGFGFHGTIPPNTISRVTGLQTLSLRSNFINGHFPCDFSNLKNLSFLYLQYNNFTGPLPDFSAWRNLSVVNLSNNFFTGTIPLSLSNLAQLTAMNLANNSLSGQIPVSLLQRFPNSAFVGNNVSLETSPLAPFSKSAKHGEATVFWVIVAASLIGLAAFVGFIFVCWSRKKKNGDSFALKLQKVDMSPEKVVSRDLDANNKIVFFEGCSYAFDLEDLLRASAEVLGKGTFGAAYKAALEDATTVVVKRLKEVAVGKKDFEQLMEVVGNLKHENVVELKGYYYSKDEKLMVYDYYTQGSLSALLHGKRGEDRVPLDWDTRMKIALGAARGLACIHCENGGKLVHGNIRSSNIFLNSKQYGCVSDLGLATIMSSVAIPISRAAGYRAPEVTDTRKATQPSDVYSFGVVLLELLTGKSPVYTTGSDEIVHLVRWVHSVVREEWTAEVFDLELIRYPNIEEEMVEMLQIAMSCVVRVPDQRPKMLELVKMIENVRQIEIVVNQPSISSENQVESSTQTPLTT 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02242 591 PANTHER OS05G0588300 PROTEIN 18 574 - -
Gma01g02242 591 Gene3D Ribonuclease Inhibitor 26 134 IPR032675 -
Gma01g02242 591 Gene3D Ribonuclease Inhibitor 135 189 IPR032675 -
Gma01g02242 591 Gene3D Transferase(Phosphotransferase) domain 1 368 582 - -
Gma01g02242 591 ProSitePatterns Protein kinases ATP-binding region signature. 298 329 IPR017441 GO:0005524
Gma01g02242 591 SUPERFAMILY L domain-like 37 189 - -
Gma01g02242 591 Gene3D Phosphorylase Kinase; domain 1 260 366 - -
Gma01g02242 591 Pfam Protein kinase domain 295 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02242 591 ProSiteProfiles Protein kinase domain profile. 292 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02242 591 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Gma01g02242 591 PANTHER PROTEIN, PUTATIVE-RELATED 18 574 - -
Gma01g02242 591 SUPERFAMILY Protein kinase-like (PK-like) 296 560 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02242 Gma-Chr1 57593490 57596007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02242 15 588 Receptor kinase-like Gene Family AT4G23740 60.968 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gma01g02242 Pkinase 1.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02242 - - gmx:100783234 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02242 01 57593490 57596007 Gma01g02242 01 57593490 57596007 ECH
Gma01g02242 01 57593490 57596007 Gma11g00174 11 1355373 1357852 GST
Gma01g02242 01 57593490 57596007 Gma05g02089 05 42182772 42185553 PCT
Gma01g02242 01 57593490 57596007 Gma08g00197 08 1719688 1724017 PCT