Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02232 ATGGGGAACTGTAACAGCGAAGCCTCTTCCCAAACTCAGCCACATTCCGATCACCATCCCCAACCACGCTCCAACTCCAACGGCATCACCGTCCTTCCTCCCAATTCGAAGCCCTCCGTTGGCCGGGTCTTGGGCCGGCCCATGGAGGACGTCCGCTCCACCTACACCTTCGGCCGCGAACTGGGCCGCGGCCAATTCGGCGTGACATACCTTGTGACCCACAAACACACCAAACAACAATTCGCGTGCAAATCCATCGCCACGCCCAAACTCGTCCACCGCGACGACTTGGAGGATGTCCGGCGAGAGGTGCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTGGAGCTCAAGGGCGCTTACGAGGACCGCCACTCCGTTAACCTCATCATGGAGCTCTGCGGCGGCGGCGAGCTCTTCGACCGGATCATTGCCAAGGGCCACTACTCCGAGCGCGCCGCCGCCGACCTCTGCCGCCAGATCGTGACGGTGGTCCACGATTGCCACACCATGGGAGTGATGCACAGGGATCTCAAGCCAGAGAACTTCCTGTTCCTCAGCAAGGACGAGAACTCGCCGCTTAAGGCCACGGACTTCGGTCTCTCCGTGTTCTTCAAGCCCGGCGACGTGTTTAAGGATCTTGTCGGGAGTGCGTACTATGTTGCTCCTGAGGTGCTGCGTAGAAGCTATGGACCCGAAGCTGATATTTGGAGTGCTGGGGTTATATTGTTCATTTTGCTCTCCGGTGTCCCTCCCTTCTGGTCAAAAAAGGAACAAGGTATCTTTGATGCTATTCTTCGTGGCCATATTGATTTCACATCAGATCCTTGGCCTTCCATATCGAGTAGTGCCAAAGATCTGGTCAAGAAGATGTTACGAGCTGACCCCAAACAAAGGCTCTCAGCAGTTGAAGTCCTTGatcatccttggatgagagaagatggagcatctgataagcctctagatgttgctgttttatccagaatgaaacaattcagggcaatgaacaagctaaagaaagttgctctgaagGTTATTGCTGAAAACCTTTCTGAAGAAGAAATCATTGGCTTGAAGGAAATGTTTAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTGCCAAAACTGGGTACTAAGGTTTCTGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTAGACGGAAATGGGACCATTGATTACATTGAATTTATAACAGCTACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTATATAAAGCTTTTGAATATTTTGACAAGGATAGAAGCGGGTACATCACAATGGAAGAGTTGGAATCTACCCTTAAAAAATATAATATGGGTGATGAGAAAACAATAAAGGAAATCATTGTGGAAGTCGATACAGACAATGATGGAAGAATTAATTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAAACCAGATTTAGTAACCAACAGACGTCGCAAATGA 1518 0.4638 MGNCNSEASSQTQPHSDHHPQPRSNSNGITVLPPNSKPSVGRVLGRPMEDVRSTYTFGRELGRGQFGVTYLVTHKHTKQQFACKSIATPKLVHRDDLEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCGGGELFDRIIAKGHYSERAAADLCRQIVTVVHDCHTMGVMHRDLKPENFLFLSKDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILFILLSGVPPFWSKKEQGIFDAILRGHIDFTSDPWPSISSSAKDLVKKMLRADPKQRLSAVEVLDHPWMREDGASDKPLDVAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKVSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDKDRSGYITMEELESTLKKYNMGDEKTIKEIIVEVDTDNDGRINYDEFVAMMRKGKPDLVTNRRRK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02232 505 MobiDBLite consensus disorder prediction 1 47 - -
Gma01g02232 505 CDD STKc_CAMK 55 312 - -
Gma01g02232 505 PANTHER SERINE/THREONINE-PROTEIN KINASE 9 497 - -
Gma01g02232 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Gma01g02232 505 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 1 9 497 - -
Gma01g02232 505 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02232 505 SUPERFAMILY Protein kinase-like (PK-like) 52 323 IPR011009 -
Gma01g02232 505 SMART efh_1 466 494 IPR002048 GO:0005509
Gma01g02232 505 SMART efh_1 395 423 IPR002048 GO:0005509
Gma01g02232 505 SMART efh_1 431 459 IPR002048 GO:0005509
Gma01g02232 505 SMART efh_1 359 387 IPR002048 GO:0005509
Gma01g02232 505 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Gma01g02232 505 Pfam EF-hand domain pair 430 492 IPR002048 GO:0005509
Gma01g02232 505 Pfam EF-hand domain pair 360 420 IPR002048 GO:0005509
Gma01g02232 505 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Gma01g02232 505 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Gma01g02232 505 Gene3D Transferase(Phosphotransferase) domain 1 141 331 - -
Gma01g02232 505 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Gma01g02232 505 ProSiteProfiles EF-hand calcium-binding domain profile. 355 390 IPR002048 GO:0005509
Gma01g02232 505 Gene3D - 338 491 - -
Gma01g02232 505 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Gma01g02232 505 Gene3D - 332 421 - -
Gma01g02232 505 ProSitePatterns EF-hand calcium-binding domain. 368 380 IPR018247 -
Gma01g02232 505 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02232 505 SUPERFAMILY EF-hand 351 492 IPR011992 -
Gma01g02232 505 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Gma01g02232 505 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02232 505 MobiDBLite consensus disorder prediction 1 34 - -
Gma01g02232 505 ProSiteProfiles EF-hand calcium-binding domain profile. 427 461 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02232 Gma-Chr1 57528276 57533404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02232 41 504 EF-hand Containing Proteins AT4G23650 82.151 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma01g02232 Pkinase 3.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02232 K13412 - gmx:100808536 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02232 01 57528276 57533404 Gma01g02232 01 57528276 57533404 ECH
Gma01g02232 01 57528276 57533404 Gma11g00183 11 1429109 1433698 GST
Gma01g02232 01 57528276 57533404 Gma05g02083 05 42104891 42111333 PCT
Gma01g02232 01 57528276 57533404 Gma08g00186 08 1641287 1646291 PCT