Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02213 ATGGGTGTCATTCTGAATAAAACCAAAGCCCATTATTGGTATTTCCACACCTCCCAAGTTCCCATCTATTTAACACCTCCATCCATGGAAACTGTGCTATCGGTATTGGGGTTCATCAGGAGACTCATCACAATCCTCTTGTGCTACATGGGCTTCCACGATTTCTTCGAATCCGACATTGCGGGGCCGGAGAGGGCGGTGTCGGCGGTGCTGATGAGGGAAATCCTGCCGGTGGTGAAGTTCTCGGAGATGGAGATGGCGGTGGAGGCGGCGGAGAGCTGCGCGGTGTGCCTGTACGAGTTCGAGGGAGAGGACGAGATCAGACGGCTGACGAACTGTCGCCACATATTCCACAGAGGGTGTCTGGACCGTTGGATGGGGTACGATCAAAGAACGTGCCCCCTGTGTCGGACACCCTTCATACCCCACCATATGCAAGCTGCATTCTATTACAATCATCACTAG 465 0.5333 MGVILNKTKAHYWYFHTSQVPIYLTPPSMETVLSVLGFIRRLITILLCYMGFHDFFESDIAGPERAVSAVLMREILPVVKFSEMEMAVEAAESCAVCLYEFEGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFYYNHH 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02213 154 SUPERFAMILY RING/U-box 80 143 - -
Gma01g02213 154 SMART ring_2 94 136 IPR001841 -
Gma01g02213 154 Pfam Ring finger domain 93 137 IPR001841 -
Gma01g02213 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 142 IPR013083 -
Gma01g02213 154 PANTHER BRH1 RING FINGER PROTEIN 28 147 - -
Gma01g02213 154 PANTHER RING ZINC FINGER PROTEIN-RELATED 28 147 - -
Gma01g02213 154 CDD RING-H2 94 137 - -
Gma01g02213 154 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02213 Gma-Chr1 57346032 57346587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02213 32 149 C3H Transcription Factor Family AT1G63840 53.435 2.86e-42 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02213 K16281 - gmx:100799478 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02213 01 57346032 57346587 Gma01g02213 01 57346032 57346587 ECH
Gma01g02213 01 57346032 57346587 Gma11g00205 11 1628716 1629671 GST
Gma01g02213 01 57346032 57346587 Gma05g02057 05 41811922 41812410 PCT
Gma01g02213 01 57346032 57346587 Gma08g00160 08 1362860 1363582 PCT