Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02199 ATGGGGAAGGGAAAACCTAGGTCTGTTGAAAAAGGTGTGGTAGGACCTAGTTTGAGTGTTACATCCTCGACTATACCTTTGGGGCCTGTGTATTACCCTACTGAGGATGAATTCAAGGATCCTTTGGAGTATATTTTCAAGATTAGACCCGAGGCTGAGCCTTTTGGTATTTGTAAGATTGTGCCTCCAAAGAGTTGGAAACCCCCTTTTGCTTTGGATCTAGACTCTTTCACTTTCCCTACCAAGACTCAGGCCATTCACAAGCTCCAGTCTCGCCCTGCTGCCTGTGACTCCAAGACCTTTGACTTGGATTACTCTAGGTTTCTGAGGGACCACTCTGGTAAGAAGTCCAGGAAGAGGGTTGTGTTCGAGGGCGAGGAGCTCGACTTGTGTAAGCTATTCAATGCCGTCAAGCGGTTTGGTGGATATGATAAGGTTGTTGATGGAAAGAAATGGGGGGATGTTGCTCGGTTTGTGAGGCCCAGTGGGAAGATTTCGGATTGTGCTAAGCATGTGTTGTGTCAGTTGTACCGGGAGCATTTGTATGATTATGAGAATTTTTATAACCGGATGAATCAAGGGATGGCTCAGCGTTGTAAGAAAGGTGTGCATGATGACCACAAGATTGACCATGGGGTGCAACCTGTGGTATCCAAGAAGAATCACAAGAGTGTTGATGGTTCAAAACATAAGGATAGTAAGGTGCAAAAAGAAGAGCATGATCAGATTTGTGAGCAATGTAAAAGTGGTTTACATGGGGAACTCATGCTATTGTGCGACAGGTGTGATAAGGGATGGCATACTTATTGTCTTTCCCCACCATTGGAGCATATTCCTCCGGGAAATTGGTATTGTTTCAACTGCTTAAATTCTGACAGGGACAGTTTTGGTTTTGTGCCTGGGAAGCACTATACATTGGAAGCTTTTAGACGCATAGCGGATCGGTCAAGGAGGAGATGGTTTGGATCAGGACCTGTTTCAAGGGTGCAAATAGAGAAGAAATTTTGGGAAATTGTGGAGGGATTGGTTGGTGAGGTTGAGGTTATGTATGGAAATGACTTGGATACATCTGTCTATGGGAGTGGTTTCCCACGTGTAACTGATCAGAAACCAAAATCGATTGATGACAAATTATGGGAAGAATACACAACTAACCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTCATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAATTATCTACACTGGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCAAGCCAGTGCTTTTGAGAAGGTGATGAAAAACAGTCTTCCTGATCTTTTTGATGCGCAACCTGATCTGCTTTTTCAACTTGTTACTATGCTAAACCCATCTGTCTTGCAAGAAAATGGAGTCCCCGTCTACAGCATACTTCAGGAGCCTGGGAATTTTGTTATTACCTTCCCCAGATCTTATCATGGAGGTTTCAATCTTGGTTTAAATTGCGCAGAGGCAGTCAATTTTGCTCCTGCCGACTGGCTACCACATGGTGCTTTTGGAGCTGATCTATATCAGCAGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGGGATGTTGATGGCAGAGTGTCTTCTTATTTGAAGAAGGAATTGTGGAGAATATCAGATAAAGAAAAATCTTGGAGAGAGAAACTTTGGAAAAATGGTATTATTAAATCTTCACGCATGGGTCCTCGAAAATGTCCCCAATATGTGGGAACGGAAGAAGATCCAGCATGCATTATATGCCAGCAATATCTCTATCTCTCTGCTGTTGTATGTGGTTGCAGGCCATCGACTTTTGTTTGTTTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGTAAAACTACGTCTTCTCTATCGGCATTCACTTGCAGAATTGTATGACTTGGCATTTTCTATGGACAAATATACTTCTGAGGACAAAGCTGAGTGTAGTAGTGTGAAAAGGAAGCCTTCATGTCTTAGTGCTTTGACCAAAAAGGTGAAAGGTGGCTCCATTACTTTTGCTCAACTTGCTACAGAGTGGCTTCTGCAATCTAGTGCTATTCTTCAGAATGTTTTTTTGCATGATGCATTTGTTACTGCACTAAGGAAAGCTGAGCAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGAGACATGGTAAAGAATTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGACTGCATAACAAAAATTGAGTTATGGTTGTGTCATCGGGATTCTAATGTCAAGAAAGTTCATTTAGAATTCATTGATGAGTTACTGAAATTTACTCCTGCGCCATGCAATGAACCTCTTTATCATAAATTGAAGGACTATGCAGAGGAAGCTAGGTTGTTAATTCAGGATATTGATACTGCTTTGTCAATGAGTTCAAATATGTCTGAGTTGGAACTTTTATACTCCAAAGCTTGTGGCCTACCCATCTACATGAAAGAAAGTAAGAAATTGGAAGGGAAGATTTCTTCAACCAAGGCATGGCTGGATAACGTCAGAAAGTGCATCTCAGCAAGACAGCCTGCTGCACTACACATTGATGCTCTTTACAAGCTAAAAGCAGAGTTTGTGGATCTTCAAGTTCAACTCCCGGAGATAGACATGCTTCTGAATCTATTAAGTCAAGTGGAATCTTGTAGTGCTCAATGTCATGATATGCTAGAAGGTCATATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGGCAGTTTCGCAGTTGATGTACCAGAGCTCAAGCTTCTAAGGCAATACCATTCAGATGCTGTTTCATGGGTTTCTCACTTTAATGATATTTTAGGGAGAGTTCAGATGCAGGAAAATCAACATAATGCAGTTGATGGATTGAAGAGCATTTTTGAAGAAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCATTAGTTGAGGTTGAGCTGAAGAAGGCTAATTGCCGGGAAAAAGCTGTGAAGGCACATGATTTGAAGATGCCTTTGGAATTCATTCAGCAACTGTTGAAGGAGTCCACTGTGCTTCACATTGAGGGAGAGAAACAATTTGTCAACTTAACTGGTGTGCTTGCTGTTGCCATTCCTTGGGAAGAAAGGGCTAGAGAGATGCTTTCACATGAGGCTCCTATTTCGGACTTTGAGGACATGATCAGAGCTTCAGAAAACATATTTGTTATTCTTCCTTCACTTAATGACATCAAGGATGCTTTATCAGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTATGTGTGCTTCAAATTCTGTGCGGAAAGTTGAGGACTTGGAGATGTTGGTTTCTCAATCGAAGCATCTTAAAGTATCTTTGGAAGAAAGAGGAACGCTTGAATTAGTTTTGAAGAATTGCAGAATATGGGAGTATGAAGCATGTTCTGTACTAGATGATGCTCGGTGCTTATTGGATAATTCTTTGCCTGAAATAAACAGTGGTTTAACTTGTAAAGTGGAAGATTTGATTGAAAGAATCCAATCTGCTATAGCATCCGGTGTATCACTTGGTTTTGACTTCAATGAGATTTCAAAACTCCAAGCATCTTGTTCTACACTGCAATGGTGCAAAAGAGCCTTGTCTTTCTGCAACTGCTCTCCTTCTTTAGAGGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTGTTTCTGGTGCTCTGTTGAAAGTATTGATTGATGGGTTTGAATGGCTTAAGAAAGCATTAGAGGGGATTTCTGGACCTCACAATTGTAGAAGATGCAAGTTGACTGACATACAAGATATTCTTACTGATTATCAGACTATTAATATGACCTTTACAGCAGTAAAATGTCAACTTGAAGATGCCATTGGAAAACATAAGTTGTGGCAGGAGCAAGTGCAACATTTTTTTGGTCTAAGCCCTAGAGAACGTTCTTTGTCTTCCATATTGCAGCTCAAGgaacatGGAGATACCATTGCCTTCAGTTGCTCTGAACTGGATTTGATTTTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGACTAGATGCATGGATAAATTAAGAATGTTGGTCCAAAATGGAAATTCCCTACTTCATGCACTGGAGAAGATAAACCAGACTCTAGATAGATCATTGTTTATGTATGACAAATTGCAAGATCTGAAGGAACAAAATCTATGTATATGCTGCTATGATGATTCTGAAGATCAGGAATTTCTTACATGTTCCACTTGTATGGACTGCTATCATCTGCGATGCGTTGGACTAACAGAAAAAGACACAGACATTGAAAACTACAAGTGCCCTTATTGTGAAATTTTGAGGGGTGAATTCCATTATCAGAATGGAGGTGCCCTCCTGAGGTTTGGGAAGAAGCATGTTGAATTGAAAGTTCTTACTGAACTCATGTCTGATGCTGAACATTTCTGTTTATGGATTGATGAAAGAGATTTTTTGAGCCGACTTGTTGAGAAAGCCCTTTCATGCAAATCTTGCTTGAGAGAAATTGTGATCCATGCATCAGCTAATGTTGATGAAGATATTAGCATTGTCTCTGAAAAATTGGCCACTGCTGTAAAGGCTAGCAAAGTGGCTATCGTCTATGACCCGCATGATATTTGTGACCTTGAGCTGACTTTAGCAAAAAACTTTTGGAAAATTCAAGTCAATAGATTGTTAAATGGTCTACCAAAGCCCACTATCCAGCAAATTCAGAAGCATCTGAAAGAGGGACTGGCTATGGACATATCACCTGAAGATCACTATATGTTGAAACTTACGAATGTGAATTGCTTGGGTTTACAGTGGGCAGAACtagccaaaaagGTGGCAACTGATTCTGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTGGTGGTAGGTGAAAACTTGCCCGTTGACATGAACGAGGAACTAAGGATATTAAGGGCACGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCAGAAAGGATGATTGCATGTTATCACTGTAATGAGTGGTATCACTTTGATTGCATGAAATTGCCTTGCACAGAAGAGGTCTACATTTGTCCTGCATGTAATCCGTGTACCGAAGGATTGCCTTCCAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACACCATCTCCCAGGCATTCAAACCCTAGAAAGAAACAGAAGAGAGACGTGCCCAGTCTCACTTGCAACATGTTCGCTACCAGGAATCAAGATAGTGAGTTTAGGTATTCGAGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCTGCTAAGAAACGTGTTGAACTTCGAAGACTTTCTCCATTTCTATGCATACAACGATAG 5493 0.41 MGKGKPRSVEKGVVGPSLSVTSSTIPLGPVYYPTEDEFKDPLEYIFKIRPEAEPFGICKIVPPKSWKPPFALDLDSFTFPTKTQAIHKLQSRPAACDSKTFDLDYSRFLRDHSGKKSRKRVVFEGEELDLCKLFNAVKRFGGYDKVVDGKKWGDVARFVRPSGKISDCAKHVLCQLYREHLYDYENFYNRMNQGMAQRCKKGVHDDHKIDHGVQPVVSKKNHKSVDGSKHKDSKVQKEEHDQICEQCKSGLHGELMLLCDRCDKGWHTYCLSPPLEHIPPGNWYCFNCLNSDRDSFGFVPGKHYTLEAFRRIADRSRRRWFGSGPVSRVQIEKKFWEIVEGLVGEVEVMYGNDLDTSVYGSGFPRVTDQKPKSIDDKLWEEYTTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSQASAFEKVMKNSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGAFGADLYQQYHKTAVLSHEELLCVVAQYGDVDGRVSSYLKKELWRISDKEKSWREKLWKNGIIKSSRMGPRKCPQYVGTEEDPACIICQQYLYLSAVVCGCRPSTFVCLEHWEHLCECKTVKLRLLYRHSLAELYDLAFSMDKYTSEDKAECSSVKRKPSCLSALTKKVKGGSITFAQLATEWLLQSSAILQNVFLHDAFVTALRKAEQFLWAGSEMDSVRDMVKNLIEAQKWAEGIRDCITKIELWLCHRDSNVKKVHLEFIDELLKFTPAPCNEPLYHKLKDYAEEARLLIQDIDTALSMSSNMSELELLYSKACGLPIYMKESKKLEGKISSTKAWLDNVRKCISARQPAALHIDALYKLKAEFVDLQVQLPEIDMLLNLLSQVESCSAQCHDMLEGHMNLKNVGLLLKEWGSFAVDVPELKLLRQYHSDAVSWVSHFNDILGRVQMQENQHNAVDGLKSIFEEGLSLKIQVDELPLVEVELKKANCREKAVKAHDLKMPLEFIQQLLKESTVLHIEGEKQFVNLTGVLAVAIPWEERAREMLSHEAPISDFEDMIRASENIFVILPSLNDIKDALSEANSWLRNSKPYLVSSMCASNSVRKVEDLEMLVSQSKHLKVSLEERGTLELVLKNCRIWEYEACSVLDDARCLLDNSLPEINSGLTCKVEDLIERIQSAIASGVSLGFDFNEISKLQASCSTLQWCKRALSFCNCSPSLEDVLEVAEGLSHSSVSGALLKVLIDGFEWLKKALEGISGPHNCRRCKLTDIQDILTDYQTINMTFTAVKCQLEDAIGKHKLWQEQVQHFFGLSPRERSLSSILQLKEHGDTIAFSCSELDLILSEVEKVENWKTRCMDKLRMLVQNGNSLLHALEKINQTLDRSLFMYDKLQDLKEQNLCICCYDDSEDQEFLTCSTCMDCYHLRCVGLTEKDTDIENYKCPYCEILRGEFHYQNGGALLRFGKKHVELKVLTELMSDAEHFCLWIDERDFLSRLVEKALSCKSCLREIVIHASANVDEDISIVSEKLATAVKASKVAIVYDPHDICDLELTLAKNFWKIQVNRLLNGLPKPTIQQIQKHLKEGLAMDISPEDHYMLKLTNVNCLGLQWAELAKKVATDSGALSLDKVFELVVVGENLPVDMNEELRILRARCMLYCICRKPFDPERMIACYHCNEWYHFDCMKLPCTEEVYICPACNPCTEGLPSNHDRLTSGKFEEPKTPSPRHSNPRKKQKRDVPSLTCNMFATRNQDSEFRYSSGIECLRWQNRKPFRRAAKKRVELRRLSPFLCIQR 1830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02199 1830 SUPERFAMILY FYVE/PHD zinc finger 1433 1483 IPR011011 -
Gma01g02199 1830 Gene3D - 80 196 IPR036431 GO:0003677
Gma01g02199 1830 CDD ARID 97 185 - -
Gma01g02199 1830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1680 1737 IPR013083 -
Gma01g02199 1830 SUPERFAMILY ARID-like 78 199 IPR036431 GO:0003677
Gma01g02199 1830 SUPERFAMILY Clavaminate synthase-like 365 562 - -
Gma01g02199 1830 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Gma01g02199 1830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1427 1495 IPR013083 -
Gma01g02199 1830 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Gma01g02199 1830 Pfam ARID/BRIGHT DNA binding domain 104 185 IPR001606 GO:0003677
Gma01g02199 1830 Gene3D Cupin 29 532 - -
Gma01g02199 1830 CDD PHD_RSF1 244 288 - -
Gma01g02199 1830 SMART PHD_3 1694 1736 IPR001965 -
Gma01g02199 1830 SMART PHD_3 243 289 IPR001965 -
Gma01g02199 1830 SMART PHD_3 1437 1483 IPR001965 -
Gma01g02199 1830 SMART bright_3 96 190 IPR001606 GO:0003677
Gma01g02199 1830 SUPERFAMILY FYVE/PHD zinc finger 1689 1741 IPR011011 -
Gma01g02199 1830 SMART cupin_9 381 547 IPR003347 -
Gma01g02199 1830 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Gma01g02199 1830 SMART JmjN_1 27 68 IPR003349 -
Gma01g02199 1830 MobiDBLite consensus disorder prediction 1749 1763 - -
Gma01g02199 1830 MobiDBLite consensus disorder prediction 211 234 - -
Gma01g02199 1830 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 1125 - -
Gma01g02199 1830 Pfam jmjN domain 29 62 IPR003349 -
Gma01g02199 1830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 290 IPR013083 -
Gma01g02199 1830 MobiDBLite consensus disorder prediction 1749 1775 - -
Gma01g02199 1830 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Gma01g02199 1830 ProSitePatterns Zinc finger PHD-type signature. 1438 1482 IPR019786 -
Gma01g02199 1830 Pfam PHD-finger 243 290 IPR019787 -
Gma01g02199 1830 ProSitePatterns Zinc finger PHD-type signature. 1695 1735 IPR019786 -
Gma01g02199 1830 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Gma01g02199 1830 ProSiteProfiles Zinc finger PHD-type profile. 1435 1485 IPR019787 -
Gma01g02199 1830 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Gma01g02199 1830 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Gma01g02199 1830 SMART ARID_2 92 185 - -
Gma01g02199 1830 Pfam PLU-1-like protein 989 1178 IPR013637 -
Gma01g02199 1830 Pfam PLU-1-like protein 1140 1393 IPR013637 -
Gma01g02199 1830 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 26 1125 - -
Gma01g02199 1830 SUPERFAMILY FYVE/PHD zinc finger 237 291 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02199 Gma-Chr1 57226507 57248130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02199 37 92 JUMONJI Transcription Factor Family AT4G20400 48.333 1.84e-09 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma01g02199 PLU-1 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02199 K11446 - gmx:100819576 3744.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02199 01 57226507 57248130 Gma01g02199 01 57226507 57248130 ECH
Gma01g02199 01 57226507 57248130 Gma11g00216 11 1711285 1729264 GST