Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02198 ATGGATGGGAGAGAAGGCATGGCATTTCCTGGTGGCTCTGTTCCATATTACATGCAGCATAGAGGAGGAGGGGTTAGTGGGTCTGGTCCAGGAACTGGGACACAGAGTGGAGGGTTTCAACCACCCTCTGGCTTTAGAGCTTTGTCAAATGTCTCTCCAGGTTCTGCATTTAAAGTAGAGTCTCATTCTTATTCTCATTCTCAGTCTCAGCCTCAGCATGCTAGTTTTAGTCATGGCATTAACATAGGTTCCTCTCCTGATGGTGGAGGTGGAGGACCTTCTTCTGGTGAGCCTGTGAAGAAGAAAAGAGGGAGGCCTAGGAAGTATGGCCCTGATGGATCTGTTTCATTGATGCTCTCTCCCATGTCTGCCACTGCTAGTTCCACGCCGGGATCAGGCACTTCTTCGGAGAAACGGCCCAGAGGGCGCCCACCTGGAAGTGGAAGGAAGCAACAGCTTGCCACTCTAGGTGAATGGATGAACAGTTCTGCAGGACTGGCTTTTTCACCTCATGTTATCACCGTTGGAGTTGACGAGGACATTGTAGCAAAGTTATTGTCATTTGCACGGCAGAGACCAAGGGCTGTGTGCATCTTAACAGGAACTGGGACAATTTCTTCAGTCACTCTGCGCCAGCCTGCTTCTACTAGCATCGGTGTCACTTATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCATACTTGGTTGCTGAAGAAGGTGGACCTCACAATAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGTCATATTATTGGTGGTGGTGTTACTAGGCTTGTTGCTTCAAGCCCAGTGCAGGTGGTAGCATGCAGTTTCGTATATGGGGGCTCCAAGCCAAAGACTAAACAAGTGACCACTACTACTACAGAAGATACCAGTTCAGAGCCTCAGAGTAGTGATAAGTTAGCTTCTCCAGGCAGTGTTCCTCCGCCTAATCAAAACTACACCTCTTCTCCTGCCCCAGGCATTTGGCCTGCATCATCAAGGCCAGTAGAGGTGAAAAGTGCACATGCACACACTGGTATTGACTTGACGCGTGGGTGA 1074 0.4916 MDGREGMAFPGGSVPYYMQHRGGGVSGSGPGTGTQSGGFQPPSGFRALSNVSPGSAFKVESHSYSHSQSQPQHASFSHGINIGSSPDGGGGGPSSGEPVKKKRGRPRKYGPDGSVSLMLSPMSATASSTPGSGTSSEKRPRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHVITVGVDEDIVAKLLSFARQRPRAVCILTGTGTISSVTLRQPASTSIGVTYEGRFQILCLSGSYLVAEEGGPHNRTGGMSVSLSSPDGHIIGGGVTRLVASSPVQVVACSFVYGGSKPKTKQVTTTTTEDTSSEPQSSDKLASPGSVPPPNQNYTSSPAPGIWPASSRPVEVKSAHAHTGIDLTRG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02198 357 CDD DUF296 170 282 IPR005175 -
Gma01g02198 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 283 IPR005175 -
Gma01g02198 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 357 IPR039605 GO:0003680
Gma01g02198 357 ProSiteProfiles PPC domain profile profile. 162 303 IPR005175 -
Gma01g02198 357 MobiDBLite consensus disorder prediction 118 136 - -
Gma01g02198 357 PRINTS AT-hook-like domain signature 100 110 IPR017956 GO:0003677
Gma01g02198 357 PRINTS AT-hook-like domain signature 136 147 IPR017956 GO:0003677
Gma01g02198 357 MobiDBLite consensus disorder prediction 1 151 - -
Gma01g02198 357 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 357 - -
Gma01g02198 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 284 - -
Gma01g02198 357 MobiDBLite consensus disorder prediction 289 333 - -
Gma01g02198 357 MobiDBLite consensus disorder prediction 28 82 - -
Gma01g02198 357 Gene3D - 170 299 - -
Gma01g02198 357 MobiDBLite consensus disorder prediction 289 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02198 Gma-Chr1 57215903 57220322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02198 1 357 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.214 1.02e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02198 - - gmx:100795781 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02198 01 57215903 57220322 Gma01g02198 01 57215903 57220322 ECH
Gma01g02198 01 57215903 57220322 Gma11g00218 11 1735143 1740146 GST
Gma01g02198 01 57215903 57220322 Gma05g02029 05 41565178 41567935 PCT
Gma01g02198 01 57215903 57220322 Gma08g00133 08 1108622 1112865 PCT