Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02193 ATGGCGAAGCTGTTAGCGTTGAGTTGCTGGCGAAGCCTCTCGCCGCGACCTCACTACCCCTCCATGCCCAAATATCCCAAGGGCGAGAGTGTCGCCACCGTCCAAGAGCTCTCTGAGTCCACCGCTGTTCTCTCCGTCGTCGGAATGAGCTGCGCTGCCTGCGCCGGATCCGTGGAGAAGGCCGTCAAACGCCTCCCCGGGATCCGTGAAGCCATCGTCGACGTCCTCAACAACCGCGCCCACGTCATCTTCTACCCCTCCTTCGTTAACGTGGAGACTATTCGCGAGGCAATTGAGGACGCTGGTTTCGAAGCCGCGTTACTCACAGACGACAAAAAATCCGTTCAAGTATGCCGCATCCAGATCAAAGGAATGAGCTGCACCTCCTGCTCCTCCACTCTGGAATCCGTTCTGCAAGCCCTTGACGGGGTCCTTGAAGCCCGCGTGGGCCTTGCCACCGAAGAGGCCCAAGTCCACTACAACCCAATTCTCCTCACCACCAACCACATCCTTCAAGCCATACAAGATTCCGGTTTCGAAGCCCAGCTTATCAGTTCAAGCCAAGACTTAAGCAAGATAGACCTCCTCGTGGAAGGTGACATAACCATGAAACTAATCGAAGATTCTCTTCAGACACTCCCAGGAGTCCTTGCCGTGGACATAACAACGGAACTAAACAAAATATCGGTTTCTTACAAACCGGACGTCACAGGACCCAGAAATTTCATTAACGTTATTCACGAAACAGGGAATGGGAATTTCAAGGCAAAGATATATCCCACAGAAGAAGGACAGAGAGATTCTCACAGACGCCAGGAAACAAAACAGTATTATAGATCTTTCTTATGGAGCTTGGTGTTCACTATTCCTGTGTTTCTAACCTCCATGGTGCTTATGTATGTTCCTGGTGTTAAGGACTCGCTTGATGCCAAAATTGTGAACATGCTTACCGTGGGGGAGGTTGCACGGTGGGTGCTTTCCACGCCGGTTCAGTTTGTGTTGGGGTGGCGGTTTTACTATGGTTCTTACAAGGCATTGCGTCGTGGCTCTGCCAACATGGATGTGCTCATTGCGCTGGGAACAAACGCAGCGTATTTTTACTCTGTTTACTCTGTTTTGAGAGCTGCCACCTCTCCGCATTTCGAGGGGAATGATTTCTTTGAGACGAGTGCGATGCTTATTTCGTTCATTCTGCTTGGGAAGTATCTTGAGATTCTGGCCAAGGGGAAGACTTCTGATGCGATTGCCAAGCTCATGAACTTGACACCGGACACGGCGGTTCTGTTGACTCTGGACGGTGATGGGAGCGTTGTTGGGGAGGAGGAGATTGATAGCAGGTTGGTTCAGAAGAACGATGTGATTAAGGTTGTTCCTGGGGCGAAGGTGGCTTCGGATGGATTTGTTGTGTGGGGGCAGAGTCACGTGAACGAGAGCATGATAACGGGGGAGGCGCGACCCGTGGCGAAGAGGAAAGGAGACACTGTTATTGGAGGGACTGTGAATGAGAATGGAGTCTTGCATGTTAAGGCAACAAGGGTGGGATCGGAGAGTGCTCTTTCGCAGATTGTTCGTCTTGTGGAGTCAGCTCAGATGGCTAAAGCGCCTGTTCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTCTGGTGATTATCATCTCGTTCACTACTTGGCTAGCCTGGTTTTTGGCTGGAAAATATCATGCTTACCCCAAGTCTTGGATACCGTCTTCTATGGACAGTTTTGAGCTTGCTCTGCAGTTTGGAATATCGGTCATGGTCATAGCCTGCCCTTGTGCTTTGGGTTTAGCGACTCCAACTGCTGTTATGGTTGGGACCGGAGTTGGTGCATCTCAGGGTGTGCTCATCAAAGGAGGCCAAGCATTAGAGAGTGCACATAAGGTGGACTGCATTGTTTTTGATAAGACGGGTACTCTCACTGTTGGGAAACCTGTGATAGTGAGAACAGAACTATTGACAAAAATGGTGCTCCAGGAGTTCTATGAACTTGTGGCTGCAGCTGAGGTGAATAGTGAGCATCCACTGGCCAAGGCCGTTGTTGAGTATGCTAAAAGATTTAGAGATGAAGAGAACCCTTCTTGGCCAGAAGCACGAGATTTTGTTTCCATCACAGGACATGGAGTAAAGGCCTCTGTTCATAATAAGGAAATAATTGTGGGTAATAAGAGCTTGTTTGCTGACCATAACATTGCAATTCCTGATGATGCTGAATATATACTTGCTGAAGCCGAAAAGATGGCTCAAACAGGAATTGTAGTATCTATAAATGGGAAAGTAGCTGGGGTTTTAGCAGTATCCGATCCATTGAAACCAGGTGCTCAAGAAGTCATTTCCATTCTGAAGTCAATGAAAATCAAGAGCATCATGGTGACTGGGGACAACTTCGGAACTGCTAGTTCTATTGCCAGGGAAGTAGGAATTGAAAATGTTATTGCTGAGGCCAAACCGGATCAAAAAGCAGAGAAAGTGAAAGACTTGCAGGCTTCTGGGTACACTGTGGCTATGGTGGGGGATGGCATCAATGATTCACCTGCACTTGTGGCAGCGGATGTGGGAATGGCAATAGGAGCTGGTACAGACATCGCTATTGAGGCTGCTGATATTGTCCTCATGAAGAGCAACTTGGAGGATGTCATAACTGCCATTGACCTTTCCAGAAAAACATTTTCCCGTATACGCCTGAATTACTTTTGGGCTTTGGGTTATAACTTGCTTGGCATCCCAATTGCTGCTGGAGCTCTTTTCCCTTCTACAAGGTTCAGATTGCCACCCTGGATTGCTGGGGCTGCTATGGCTGCCTCCTCTGTCAGCGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAGGAGACCCAGGAAGCTAGACAACCTTGAGATACGTGGCATAAGGGTTGAGTCATCCAGTGATATATGA 2937 0.4862 MAKLLALSCWRSLSPRPHYPSMPKYPKGESVATVQELSESTAVLSVVGMSCAACAGSVEKAVKRLPGIREAIVDVLNNRAHVIFYPSFVNVETIREAIEDAGFEAALLTDDKKSVQVCRIQIKGMSCTSCSSTLESVLQALDGVLEARVGLATEEAQVHYNPILLTTNHILQAIQDSGFEAQLISSSQDLSKIDLLVEGDITMKLIEDSLQTLPGVLAVDITTELNKISVSYKPDVTGPRNFINVIHETGNGNFKAKIYPTEEGQRDSHRRQETKQYYRSFLWSLVFTIPVFLTSMVLMYVPGVKDSLDAKIVNMLTVGEVARWVLSTPVQFVLGWRFYYGSYKALRRGSANMDVLIALGTNAAYFYSVYSVLRAATSPHFEGNDFFETSAMLISFILLGKYLEILAKGKTSDAIAKLMNLTPDTAVLLTLDGDGSVVGEEEIDSRLVQKNDVIKVVPGAKVASDGFVVWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHVKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVIIISFTTWLAWFLAGKYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVDCIVFDKTGTLTVGKPVIVRTELLTKMVLQEFYELVAAAEVNSEHPLAKAVVEYAKRFRDEENPSWPEARDFVSITGHGVKASVHNKEIIVGNKSLFADHNIAIPDDAEYILAEAEKMAQTGIVVSINGKVAGVLAVSDPLKPGAQEVISILKSMKIKSIMVTGDNFGTASSIAREVGIENVIAEAKPDQKAEKVKDLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYFWALGYNLLGIPIAAGALFPSTRFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPRKLDNLEIRGIRVESSSDI 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02193 978 Pfam E1-E2 ATPase 421 618 - -
Gma01g02193 978 ProSiteProfiles Heavy-metal-associated domain profile. 117 183 IPR006121 GO:0046872
Gma01g02193 978 SUPERFAMILY Calcium ATPase, transmembrane domain M 388 913 IPR023298 -
Gma01g02193 978 ProSitePatterns Heavy-metal-associated domain. 46 75 IPR017969 GO:0046872
Gma01g02193 978 Gene3D - 607 901 IPR023214 -
Gma01g02193 978 SUPERFAMILY HMA, heavy metal-associated domain 203 251 IPR036163 GO:0046872
Gma01g02193 978 SUPERFAMILY HMA, heavy metal-associated domain 114 186 IPR036163 GO:0046872
Gma01g02193 978 SFLD p-type atpase 622 896 IPR044492 -
Gma01g02193 978 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 393 926 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma01g02193 978 SUPERFAMILY HAD-like 639 950 IPR036412 -
Gma01g02193 978 CDD HMA 206 250 IPR006121 GO:0046872
Gma01g02193 978 Pfam Heavy-metal-associated domain 44 104 IPR006121 GO:0046872
Gma01g02193 978 Pfam Heavy-metal-associated domain 120 180 IPR006121 GO:0046872
Gma01g02193 978 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 12 964 - -
Gma01g02193 978 Gene3D - 36 108 - -
Gma01g02193 978 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 353 953 IPR027256 GO:0006812|GO:0016021|GO:0019829
Gma01g02193 978 Gene3D - 725 775 IPR023299 GO:0000166
Gma01g02193 978 Gene3D - 647 724 IPR023299 GO:0000166
Gma01g02193 978 PRINTS Copper-transporting ATPase signature 338 357 - -
Gma01g02193 978 PRINTS Copper-transporting ATPase signature 390 409 - -
Gma01g02193 978 PRINTS Copper-transporting ATPase signature 410 428 - -
Gma01g02193 978 PRINTS Copper-transporting ATPase signature 549 563 - -
Gma01g02193 978 PRINTS Copper-transporting ATPase signature 821 838 - -
Gma01g02193 978 CDD HMA 43 106 IPR006121 GO:0046872
Gma01g02193 978 Pfam haloacid dehalogenase-like hydrolase 636 858 - -
Gma01g02193 978 PANTHER ATP7, ISOFORM B 12 964 - -
Gma01g02193 978 SUPERFAMILY HMA, heavy metal-associated domain 40 111 IPR036163 GO:0046872
Gma01g02193 978 CDD P-type_ATPase_Cu-like 279 954 - -
Gma01g02193 978 SFLD C1.7: P-type atpase like 622 896 - -
Gma01g02193 978 PRINTS Copper-transporting ATPase 1 signature 41 66 - -
Gma01g02193 978 PRINTS Copper-transporting ATPase 1 signature 67 90 - -
Gma01g02193 978 PRINTS Copper-transporting ATPase 1 signature 96 116 - -
Gma01g02193 978 PRINTS Copper-transporting ATPase 1 signature 140 161 - -
Gma01g02193 978 Gene3D - 203 258 - -
Gma01g02193 978 ProSitePatterns E1-E2 ATPases phosphorylation site. 642 648 IPR018303 -
Gma01g02193 978 ProSiteProfiles Heavy-metal-associated domain profile. 41 107 IPR006121 GO:0046872
Gma01g02193 978 PRINTS P-type cation-transporting ATPase superfamily signature 476 490 - -
Gma01g02193 978 PRINTS P-type cation-transporting ATPase superfamily signature 640 654 - -
Gma01g02193 978 PRINTS P-type cation-transporting ATPase superfamily signature 769 780 - -
Gma01g02193 978 PRINTS P-type cation-transporting ATPase superfamily signature 791 801 - -
Gma01g02193 978 PRINTS P-type cation-transporting ATPase superfamily signature 844 863 - -
Gma01g02193 978 PRINTS P-type cation-transporting ATPase superfamily signature 867 879 - -
Gma01g02193 978 TIGRFAM TIGR00003: copper ion binding protein 44 105 IPR006122 GO:0005507
Gma01g02193 978 TIGRFAM TIGR00003: copper ion binding protein 120 181 IPR006122 GO:0005507
Gma01g02193 978 ProSitePatterns Heavy-metal-associated domain. 122 151 IPR017969 GO:0046872
Gma01g02193 978 Gene3D - 408 530 - -
Gma01g02193 978 SUPERFAMILY Calcium ATPase, transduction domain A 440 526 IPR008250 -
Gma01g02193 978 CDD HMA 120 181 IPR006121 GO:0046872
Gma01g02193 978 Gene3D - 116 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02193 Gma-Chr1 57183127 57187710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02193 3 973 Primary Pumps ATPases AT1G63440 74.343 0.0 1508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02193 K17686 - gmx:100816893 1865.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02193 01 57183127 57187710 Gma01g02193 01 57183127 57187710 ECH
Gma01g02193 01 57183127 57187710 Gma08g00129 08 1092676 1098979 PCT