Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02180 ATGTTGGAGGTTAAAAAGGAGCTCAACGATTTCAATTTTGATTCACGGCTTCCAGATGGACTCAATTTATGTTTTTCTTCTTCTCCCAATTGCAACACCGATACCTTTCTTCAGGAATCAACCCCAATTGCAGGGACAACAAAAGCACGAGCTAGACGCTGGACAGAAGAAGAGGACAAACTTTTGAGTGAGAAGGTCAAGAAGCACAATGGAAGGAACTGGAAGAAAATAGCTGCATACCTCCCTGGGCGAACTGACGTCCAATGTTTGCATCGCTGGCAAAAGGTTTTAAATCCTGATCTTGTAAAGGGTTCATGGACAAAGAAGGAAGATGATCGCCTCATTGAACTGGTCAGAAAGTATGGTATCAAGAGATGGTTTTTTATTGCAAAATACTTGCCAGGTCGTATTGGAAAGCAATGCCGAGAGAGGTGGCACAATCATCTTGATCCAACCGTAAAGAAGGATGCATGGACAGAGGAGGAGGAACTAATACTTGCTTACTATTACCAAATATACGGCAGTAAGTGGGCAGAAATTGCAAGGATTCTTCCCGGAAGGACTGACAATGCTATAAAAAATCATTGGAACTGCTCAATGAAGAAGAAATTGGATGCATCACCCTTAGGGTGTGACATAAAAGTTGCCTCTTCCGGTTTCTGTGCTTCTGGAATAAGGCCTGAACATGTTGTGGCTAAAGTGGAGGGTCAAAGTTTCAATGGAATGGTTTCTCCCAAGCAGAGTCACTGGTTGAATCGCAGTGTTGATAACATTCTAACAAAATTGATTCTTCAAAATGATTCAGGAGAGGAATCTTGCTCTGCTTCATCCAGGGGGACTCCTACTCCTAGGGCCTCAAGACAGTTTTTGGATAATTCTCTGGATTGTTTACCTCTTTCCAGTACTGTTACAGATGAGGCCTATGAGTCACTGAAACGGCAAAAGGTTTATTTTTCAGATACAGAGCTTAAAGTGGGTGATGAATCTGACAGTCCCCTTTTGAATTTGAGCTACTCAAAATCTGCCAACCGTGAGAAGAAAGGTCAAGCTGGAAATGGAGGCAATTACAACTCAAACAACACTATGCCACATAGTGTAGATGAATTCAGTGAATGTCTAAGTCCAAAAACACACATGGCATTGGCATGTGCATACAATAACGGTTGTACTCCCCCAACGTCTATACTCAAGAATGACACAGGCGACATCAACCCAGAAACTTTGCTAAGAAACTTAGCAATGACCTATGAGAATGTTCCTTCTATTATAAGGAAAAGGACACCCAAGAAAGGCAAGCTGTTGTGA 1305 0.4215 MLEVKKELNDFNFDSRLPDGLNLCFSSSPNCNTDTFLQESTPIAGTTKARARRWTEEEDKLLSEKVKKHNGRNWKKIAAYLPGRTDVQCLHRWQKVLNPDLVKGSWTKKEDDRLIELVRKYGIKRWFFIAKYLPGRIGKQCRERWHNHLDPTVKKDAWTEEEELILAYYYQIYGSKWAEIARILPGRTDNAIKNHWNCSMKKKLDASPLGCDIKVASSGFCASGIRPEHVVAKVEGQSFNGMVSPKQSHWLNRSVDNILTKLILQNDSGEESCSASSRGTPTPRASRQFLDNSLDCLPLSSTVTDEAYESLKRQKVYFSDTELKVGDESDSPLLNLSYSKSANREKKGQAGNGGNYNSNNTMPHSVDEFSECLSPKTHMALACAYNNGCTPPTSILKNDTGDINPETLLRNLAMTYENVPSIIRKRTPKKGKLL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02180 434 ProSiteProfiles Myb-like domain profile. 98 149 IPR001005 -
Gma01g02180 434 PANTHER MYB PROTEIN-RELATED 53 271 - -
Gma01g02180 434 PANTHER TRANSCRIPTION REPRESSOR MYB5 53 271 - -
Gma01g02180 434 SMART sant 50 99 IPR001005 -
Gma01g02180 434 SMART sant 102 151 IPR001005 -
Gma01g02180 434 SMART sant 154 202 IPR001005 -
Gma01g02180 434 CDD SANT 157 197 IPR001005 -
Gma01g02180 434 ProSiteProfiles Myb-like domain profile. 150 200 IPR001005 -
Gma01g02180 434 CDD SANT 105 149 IPR001005 -
Gma01g02180 434 Pfam Myb-like DNA-binding domain 53 97 IPR001005 -
Gma01g02180 434 Pfam Myb-like DNA-binding domain 103 149 IPR001005 -
Gma01g02180 434 Pfam Myb-like DNA-binding domain 155 197 IPR001005 -
Gma01g02180 434 Gene3D - 50 102 - -
Gma01g02180 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 153 IPR017930 -
Gma01g02180 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 204 IPR017930 -
Gma01g02180 434 CDD SANT 53 97 IPR001005 -
Gma01g02180 434 Gene3D - 156 213 - -
Gma01g02180 434 Gene3D - 103 154 - -
Gma01g02180 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 97 IPR017930 -
Gma01g02180 434 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Gma01g02180 434 ProSiteProfiles Myb-like domain profile. 46 97 IPR001005 -
Gma01g02180 434 SUPERFAMILY Homeodomain-like 100 196 IPR009057 -
Gma01g02180 434 MobiDBLite consensus disorder prediction 338 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02180 Gma-Chr1 57087823 57091319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02180 54 426 MYB Transcription Factor Family AT5G02320 39.119 1.47e-78 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma01g02180 Myb_DNA-binding 9.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02180 - - gmx:100814774 899.812