Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02178 ATGGCCACCACAAGGTCATCTTCCGAGGACATCGTCGATTCCACGCCGCTGCTCGCCAATTCCGGCGGCTCCTCCGACGAGCTCACCTCCGGCCGCGGTTTTTCGCGGCGACAGCGGCTACGGCAGGCGGCGCGGTTCCTCCGGCGGGCGAGCGGGCGCCGGATGATGCGCGAGCCGTCGATGCTGGTCCGGGAGGCCGCGGCGGAGCAATTGGAGGAGCGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTGGTTCTGGACATCGTGTGGAACTTCGCGTTTGTGGTTGTGGCGGGGGCCGTGCTGGTTTTGAGCGCGAGCGAAGCGCCGGGCATGCCTCTGAGGTTGTGGATTGTAGGGTACGCTATGCAATGCGTCCTTCACATGGTTTGCGTTTGCGTCGAGTATAGGAGGCGGAGGAGGCAGCAACGCGCCGCCGCCTCGTCAGTGCAAGACAGGGTTGGGAGCAGCAGTGGAAATTTGAGTGTATCTTCGAGGGAGGGTTCTGCTTCTGGCTCGGCGCAGTATGTGTCGTTGGGCCAACTCGATGACGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCAAATACAATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGGGGTCAAGCATTAGCCCAAGACTCTCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTTTTCTTTGTTGTTTTCTGTGTTGCACTTGCGTGCATCATTGGTATTGCTGTTTGCTGTTGCCTTCCATGTATCATTGCACTTCTTTATGCAGTTGCAGACCAGGAAGGGGCATCAAAGGAAGACATTGAGCAGTTGTCAAAGTTTAAATTCCGAAGAATTGAAAGTAATGAGAAACTTACCGGTACTATACAAGGACCTGTTGGAGGAATAATGACCGAATGCCAGGCTGATTCACCTATTGAACATGTTCTTGCTGAGGAAGATGCGGAATGTTGCATCTGCCTTTCTTCTTACGATGATGGGGTTGAGCTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGTCTGTGTGGATAAATGGCTGTATATTAATGCTACATGCCCCCTCTGCAAGTATAACATCTTAAAAAGTAACACCCTCAGTCAAGAGGAAGTGTAG 1158 0.5225 MATTRSSSEDIVDSTPLLANSGGSSDELTSGRGFSRRQRLRQAARFLRRASGRRMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNFAFVVVAGAVLVLSASEAPGMPLRLWIVGYAMQCVLHMVCVCVEYRRRRRQQRAAASSVQDRVGSSSGNLSVSSREGSASGSAQYVSLGQLDDEGTSVAKHLESANTMFSFVWWIIGFYWVSAGGQALAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIESNEKLTGTIQGPVGGIMTECQADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCVCVDKWLYINATCPLCKYNILKSNTLSQEEV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02178 385 MobiDBLite consensus disorder prediction 1 35 - -
Gma01g02178 385 CDD RING-H2_RNF111_like 329 373 - -
Gma01g02178 385 SMART ring_2 330 370 IPR001841 -
Gma01g02178 385 Pfam Ring finger domain 329 371 IPR001841 -
Gma01g02178 385 MobiDBLite consensus disorder prediction 148 169 - -
Gma01g02178 385 MobiDBLite consensus disorder prediction 1 31 - -
Gma01g02178 385 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Gma01g02178 385 PANTHER TARGET OF ERK KINASE MPK-1 3 385 - -
Gma01g02178 385 SUPERFAMILY RING/U-box 320 376 - -
Gma01g02178 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 384 IPR013083 -
Gma01g02178 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02178 Gma-Chr1 57068188 57073967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02178 14 378 C3H Transcription Factor Family AT1G68070 50.000 1.20e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02178 - - gmx:100790497 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02178 01 57068188 57073967 Gma01g02178 01 57068188 57073967 ECH
Gma01g02178 01 57068188 57073967 Gma11g00237 11 1848593 1854103 GST
Gma17g01214 17 10663121 10667444 Gma01g02178 01 57068188 57073967 PCT
Gma05g00459 05 4362817 4368007 Gma01g02178 01 57068188 57073967 PCT