Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02176 ATGCGCATTGCGCACCTCACCTCCAGAACTCCGGCGACTTCAATGAGCAGCGGCGAGGAAAGAGAAACTGCGGCCTTCCGTGCTCTCGCGGATCGCTGCCGGAGCCTCGAGGAGAAGCAGACCAAGCTCAGGGAGGAGTTCGATGAGCTGTTGCAGAAGAACAACCTCACAGTCAGGGACGATAACGATCACGTTAGCGGTAACGGTAACAATAACGAGGTCATTGCTGATTCAACAACCGACGGTTTTCTTTCCGGTTTCATCTTCTCCGGAAATCCCTACGCAACCGTGTTGAAATGCATGGGCCACGCCGTTCACGTTCTTAGAGTTCCCTCCTCCGAGATCGTATACTGGAATCACTCAGCAGAAACTCTGTATGGATGGAAGGACTACGAAATCATTGGCCAAAGAGTAGCTAAAGTCCTAATTGCTGAAGAAAATTATGCATCTCTTCAAAAAATTCTGGAAGGGTTGGTCACAGGCGTACCATGGTCTGGGCAGTTTCCTTTCAAGAAGAGGTCTGGTGAAGTATTTATGGCAATGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAGCTGTTTCAAGTGACGCAGCTATATTAAACACTACAAATTCAGAAAATCAAAGAACTTACCAATCTGGTAACAATGGCCAACCTGGAGTACAGAGGTTAAACTTAAAAAGAATTCAGTGGCCTCCACGACCAATGATTGCATCGATGCCACAGATTGCTTCAAGTGTTTCCGATCTGGCATCCAAGCTCCTCCCGGTGCTGAATACTACTGATGACACAGTTTCCCAGAATACTTCAACAGATGCAAATGATGAAAAACTAGAGAAGCGTGGCATATATGAAACAAAACCTCATTCCAGACATCACCATAAAGAAAACACAACTGTCACTGAGGCCTCTGAGAAGGATGAGTCTACTACAGAATTTGGTCAACCTTCTAATATTGCAGCCAGAGTCCTTGCCAAGCTTCAAATTGGGGCACATGCAAAATGTGGGAAGGATAATGGAAATATCAAAAATAATTGTACAGCTGATAATTCAGGAAGCAATAGAGTGAATAATGAAAATGATTTGCTTGGAGATTTATTGTCATTAAATCGACACCAGGACGTTGCTAATGGAGCAGATAAAGAAGAAAATCTTCATAAATGTAATTCTTTATTTGCAATGAAGAGAGCAGATACAAAAGTTTGTGCATGTAGAGCTTCCAATGTTGTCAAAGATAGTTCTGGTAAACCTTTCTCAGGGGAGTGGTGTGAATGCTTTGGTTCTCCCATTCCCCATGACCCGTTGTTAAGATTACGCTGTCAATTTGATCAGAAGAAATTGGAGCCAGAGGCTATGAATATGGCAACAGGAGATGAAGTGCAAAAGCAGCAAGAAGGGTTGCAATTGCCAAGTTCGAGGGAGAGTATAGGCAGCCATGAAAGTTCATCAAGCAAAGGAGATAATGAGTCAAACTCTGTTTCAAAGTGTGAAATCCATTGGGAACATCTTCAATTAAGAGAAGAGATCGGACAAGgttcttgtgctgttgtttatcatGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTACTTCGGGAATGAATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAGTATATTCACAGGAAAGACTTGCCATTGTGACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATTTGCACAGGAACAATCAGACATTAGACATCAGAAGGCGCCTAAGGATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATAGAGACCTGAAGTCTTCTAACCTGCTTGTAGATAAAAACTGGACTGTAAAGgttggagactttggcctgtctaggttgaaggatgcaactttattaactacaaaatctgggagaggcaccCCTCAATGGatggcccctgaagtcctaagaaatgaaccttcaaatgagaaGTCTGATGTGTACAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCATGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATGGATAGACGACTAGACCTTCCAGAGGGGCTTGATCCCCATGTTGCATCAATCATCGATGACTGCTGGCGAAGTGATCCAGAGCAACGCCCATCATTTGAGGAGCTGATACAGAGAACGTTGTTCCTTGTCAACAGAGTAACAGCAGTGTCAATTAGGAGAATTTCAGAATCCTGA 2340 0.4051 MRIAHLTSRTPATSMSSGEERETAAFRALADRCRSLEEKQTKLREEFDELLQKNNLTVRDDNDHVSGNGNNNEVIADSTTDGFLSGFIFSGNPYATVLKCMGHAVHVLRVPSSEIVYWNHSAETLYGWKDYEIIGQRVAKVLIAEENYASLQKILEGLVTGVPWSGQFPFKKRSGEVFMAMVTKTPLYEDGELVGVIAVSSDAAILNTTNSENQRTYQSGNNGQPGVQRLNLKRIQWPPRPMIASMPQIASSVSDLASKLLPVLNTTDDTVSQNTSTDANDEKLEKRGIYETKPHSRHHHKENTTVTEASEKDESTTEFGQPSNIAARVLAKLQIGAHAKCGKDNGNIKNNCTADNSGSNRVNNENDLLGDLLSLNRHQDVANGADKEENLHKCNSLFAMKRADTKVCACRASNVVKDSSGKPFSGEWCECFGSPIPHDPLLRLRCQFDQKKLEPEAMNMATGDEVQKQQEGLQLPSSRESIGSHESSSSKGDNESNSVSKCEIHWEHLQLREEIGQGSCAVVYHGIWNGSDVAVKVYFGNEYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKNLHRNNQTLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLTTKSGRGTPQWMAPEVLRNEPSNEKSDVYSFGVILWELMTQSIPWKNLNSLQVVGVVGFMDRRLDLPEGLDPHVASIIDDCWRSDPEQRPSFEELIQRTLFLVNRVTAVSIRRISES 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02176 779 Pfam Protein tyrosine and serine/threonine kinase 509 759 IPR001245 GO:0004672|GO:0006468
Gma01g02176 779 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 29 765 - -
Gma01g02176 779 MobiDBLite consensus disorder prediction 463 498 - -
Gma01g02176 779 MobiDBLite consensus disorder prediction 290 315 - -
Gma01g02176 779 CDD PAS 114 202 IPR000014 -
Gma01g02176 779 PANTHER SERINE-THREONINE PROTEIN KINASE 29 765 - -
Gma01g02176 779 ProSiteProfiles PAS repeat profile. 112 162 IPR000014 -
Gma01g02176 779 TIGRFAM sensory_box: PAS domain S-box protein 113 202 IPR000014 -
Gma01g02176 779 Gene3D PAS domain 90 219 - -
Gma01g02176 779 SMART serkin_6 509 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02176 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Gma01g02176 779 Gene3D Transferase(Phosphotransferase) domain 1 588 769 - -
Gma01g02176 779 MobiDBLite consensus disorder prediction 463 497 - -
Gma01g02176 779 MobiDBLite consensus disorder prediction 290 319 - -
Gma01g02176 779 ProSiteProfiles Protein kinase domain profile. 509 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02176 779 Coils Coil 26 53 - -
Gma01g02176 779 MobiDBLite consensus disorder prediction 1 21 - -
Gma01g02176 779 SUPERFAMILY Protein kinase-like (PK-like) 497 768 IPR011009 -
Gma01g02176 779 PRINTS Tyrosine kinase catalytic domain signature 688 710 IPR001245 GO:0004672|GO:0006468
Gma01g02176 779 PRINTS Tyrosine kinase catalytic domain signature 732 754 IPR001245 GO:0004672|GO:0006468
Gma01g02176 779 PRINTS Tyrosine kinase catalytic domain signature 622 640 IPR001245 GO:0004672|GO:0006468
Gma01g02176 779 PRINTS Tyrosine kinase catalytic domain signature 669 679 IPR001245 GO:0004672|GO:0006468
Gma01g02176 779 PRINTS Tyrosine kinase catalytic domain signature 583 596 IPR001245 GO:0004672|GO:0006468
Gma01g02176 779 Pfam PAS domain 111 202 IPR000014 -
Gma01g02176 779 SUPERFAMILY PYP-like sensor domain (PAS domain) 112 202 IPR035965 -
Gma01g02176 779 Gene3D Phosphorylase Kinase; domain 1 497 586 - -
Gma01g02176 779 CDD STKc_MAP3K-like 515 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02176 Gma-Chr1 57052496 57058848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02176 17 767 MAP Kinase Kinase Kinase AT4G23050 43.974 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gma01g02176 PK_Tyr_Ser-Thr 2.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02176 - - gmx:100813707 1547.72