Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02170 ATGGTTCGACAAGAGGGTCTCCAAGGGATTTTTAGGGACTACACTGATAAGGTCTTGGGCTGTTTTGCTTGCTCCATTGGCGTCCAAACAATGTTGTTCGCGGAGCTTTTTGCTGTTATTCGGGCATTGGAAATTGTAAAAGAAAAAGTCCCACAAATCTCAAAGTTGCAAGAAGTCCCATTCCATATTCCTTTTCTGAGGTGCATCCATTGGAGCAAGTCCTCATTTGGCACGTGCGAGCCTCACTTAAATAGCATTAGCATGGCCCCCTcatcatcaccatcttccaagaggcacccactgttccacggaatccgttgccgcggaaggaaatgggtctccgaaatccgcgagccacgcaaggcctctcgcatatggcttggcaccttccccacgccggagatggccgccgctgcctacgacgtggccgcgttggccttaaaaggcgacggcgctgttctcaacctccctcactcggtttcaaagtatcaaatgcctttaaccaactctcctgcggatattcgcagtgctgcctccgctgcagccgcaatgataaaggCCGAAACTGAAACTGAAGCTACCCACAACCACAACATGAATATTGCATCAATAACTGATAATGAAGCTACCTACACTGCTTCAACTTCGTGGTTTGAAACTGATTTCATCGACGAGGAAGTCATATTTGGTATGCCAAGTTTGCTGGTGGACATGGCCGGGGGAATGCTTCTGTCGCCGCCCAGAATGAGCCCGCCACCGTCCGATAACTCGCTGGAGAAGCAAAATGGTGAAACTTTGTGGAGCTATTTTTGA 813 0.2964 MVRQEGLQGIFRDYTDKVLGCFACSIGVQTMLFAELFAVIRALEIVKEKVPQISKLQEVPFHIPFLRCIHWSKSSFGTCEPHLNSISMAPSSSPSSKRHPLFHGIRCRGRKWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDGAVLNLPHSVSKYQMPLTNSPADIRSAASAAAAMIKAETETEATHNHNMNIASITDNEATYTASTSWFETDFIDEEVIFGMPSLLVDMAGGMLLSPPRMSPPPSDNSLEKQNGETLWSYF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02170 270 Gene3D AP2/ERF domain 102 159 IPR036955 GO:0003700|GO:0006355
Gma01g02170 270 MobiDBLite consensus disorder prediction 246 270 - -
Gma01g02170 270 SUPERFAMILY DNA-binding domain 103 159 IPR016177 GO:0003677
Gma01g02170 270 PANTHER ETHYLENE RESPONSE FACTOR 91 270 - -
Gma01g02170 270 SMART rav1_2 101 163 IPR001471 GO:0003700|GO:0006355
Gma01g02170 270 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 91 270 - -
Gma01g02170 270 MobiDBLite consensus disorder prediction 254 270 - -
Gma01g02170 270 ProSiteProfiles AP2/ERF domain profile. 82 157 IPR001471 GO:0003700|GO:0006355
Gma01g02170 270 Pfam AP2 domain 104 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02170 Gma-Chr1 56991044 56992617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02170 96 269 AP2-EREBP Transcription Factor Family AT5G52020 51.136 6.68e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma01g02170 AP2 2.9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02170 - - gmx:100811020 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02170 01 56991044 56992617 Gma01g02170 01 56991044 56992617 ECH
Gma17g01224 17 10781679 10782209 Gma01g02170 01 56991044 56992617 PCT
Gma05g00470 05 4478601 4479739 Gma01g02170 01 56991044 56992617 PCT