Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02169 ATGAACATTTTCAAATCCCCACTGGACCATGATTTGAACTGTGGTGGAATATTCCACGACTCAGCAGAAGCATCTTATTCGTCTGAAACAAGGAGCACCCCCTCAGACGAAGAAGTGATTCTAGCGTCAGCGCGGCCAAAGAAGCGAGCGGGAAGAAGAGTCTTCAAGGAGACAAGGCACCCCGTCTACCGAGGAGTGCGTCGCAGGAACAAGAACAAGTGGGTCTGCGAGATGCGAGTCCCCAACAACAACTCACGGATTTGGCTCGGGACATACCCAACGCCCGAAATGGCCGCACGTGCGCACGACGTTGCGGCGCTCGCGCTCAGGGGAAAGTCCGCGTGCCTCAACTTCGCGGACTCCAGGTGGCGGCTGACGGTGCCGGCGACCACCAACGCGGAGGAGATACGGCGAGCGGCGGGGGAGGCTGCTGAGGCATTTGCAGTTGCAGATGGGGACGACGTTAATATTGACCAACAGCAGAGTGTGATGGCCACGAATGATGATGAAGTTCAAGAGCCTCTCCAGCAGGAGGAGGTTCAAGACTTGCATGATTTGCTTTTGAGTATTGCGAATGAGCCTTTGATGTCTCCTCCACCCTGTGCAAGAGATGgctacaataacaacggcggtcctgaaggtgacgacacaactatcattgatggtctgggtgttgctagatggagagttggtggaatagaagcagaagctgcaatgcttggccagaataccttggtagagttgtgttcaacacaaatggtgggaactgattcagacacaagtatcattgatggcctgggtgttggtggatggggagttgctggaatagaagcaaaagttacaatgcttggccaagtacaaaatcaggttaatttagaataccttggtagagttgtgttcaacacaaatggcgggaactga 921 0.3702 MNIFKSPLDHDLNCGGIFHDSAEASYSSETRSTPSDEEVILASARPKKRAGRRVFKETRHPVYRGVRRRNKNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSRWRLTVPATTNAEEIRRAAGEAAEAFAVADGDDVNIDQQQSVMATNDDEVQEPLQQEEVQDLHDLLLSIANEPLMSPPPCARDGYNNNGGPEGDDTTIIDGLGVARWRVGGIEAEAAMLGQNTLVELCSTQMVGTDSDTSIIDGLGVGGWGVAGIEAKVTMLGQVQNQVNLEYLGRVVFNTNGGN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02169 306 Pfam Aconitase family (aconitate hydratase) 248 288 IPR001030 -
Gma01g02169 306 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 209 IPR045277 GO:0003700
Gma01g02169 306 SUPERFAMILY Aconitase iron-sulfur domain 252 293 IPR036008 -
Gma01g02169 306 Gene3D Aconitase, domain 3 214 246 IPR015931 -
Gma01g02169 306 Gene3D Aconitase, domain 3 247 288 IPR015931 -
Gma01g02169 306 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Gma01g02169 306 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Gma01g02169 306 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
Gma01g02169 306 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Gma01g02169 306 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Gma01g02169 306 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Gma01g02169 306 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Gma01g02169 306 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 209 - -
Gma01g02169 306 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02169 Gma-Chr1 56977743 56980338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02169 35 199 AP2-EREBP Transcription Factor Family AT1G12610 52.809 4.46e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma01g02169 Aconitase 3.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02169 - - gmx:100789097 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02169 01 56977743 56980338 Gma01g02169 01 56977743 56980338 ECH
Gma17g01225 17 10792203 10793258 Gma01g02169 01 56977743 56980338 PCT
Gma05g00471 05 4485757 4486746 Gma01g02169 01 56977743 56980338 PCT