Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02159 ATGCAAGAACCAAGCTTGGGATTGATGGGTGAGGTCTCCGGCGATCACCACCGTCAGCTGAAGGCGGAGATAACGACTCATCCGCTGTACGAGCAGCTTCTGGCAGCACACGTGGCATGCCTCCGTGTGGCCACCCCGATCGACCAGCTTCCACTCATCGATGCTCAGTTATCTCAGTCTCACCATCTTCTACGCTCTTATGTCTCACACAACACTCATTCTCTCTCCCCTCATCACCGCCAAGAACTTGACAACTTCCTGGCACAATATTTGATAGTTCTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTAAGAGTCCACGCCGTCGAGGCTGTCATGGCCTGCCGTGATATCGAAAATGCCTTACAAGCTCTAACTGGAGTGAGTTTGGGAGAAGGAACTGGTGCAACAATGTCAGATGATGAAGATGATTTACAAATGGATATTTCTTTAGATCAATCTAGCGCGGAAGGGCATGACATGATGGGATTTGGTCCATTACTTCCTACAGAATCTGAAAGGTCATTGATGGAAAGAGTTCGCCAGGAACTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTCAGGGAAGAAATATTAAGGAAACGTAGAGCTGGGAAATTACCAGGTGACACAACTTCTGTGTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGTAACTCTCAATCGGTTACCTCTTTGAAGTCGAAGCGCAAGAGGTAG 846 0.4669 MQEPSLGLMGEVSGDHHRQLKAEITTHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYVSHNTHSLSPHHRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENALQALTGVSLGEGTGATMSDDEDDLQMDISLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02159 281 SUPERFAMILY Homeodomain-like 206 271 IPR009057 -
Gma01g02159 281 ProSiteProfiles ELK domain profile. 184 204 IPR005539 GO:0003677
Gma01g02159 281 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 281 - -
Gma01g02159 281 Pfam Homeobox KN domain 224 263 IPR008422 GO:0003677|GO:0006355
Gma01g02159 281 SMART KNOX2_2 73 128 IPR005541 GO:0003677|GO:0005634
Gma01g02159 281 SMART HOX_1 206 271 IPR001356 GO:0003677
Gma01g02159 281 ProSiteProfiles 'Homeobox' domain profile. 204 267 IPR001356 GO:0003677
Gma01g02159 281 Gene3D - 203 277 - -
Gma01g02159 281 CDD homeodomain 207 268 IPR001356 GO:0003677
Gma01g02159 281 Pfam KNOX2 domain 77 127 IPR005541 GO:0003677|GO:0005634
Gma01g02159 281 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 11 281 - -
Gma01g02159 281 SMART KNOX1_2 18 62 IPR005540 GO:0003677|GO:0005634
Gma01g02159 281 Pfam KNOX1 domain 20 61 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02159 Gma-Chr1 56880966 56887718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02159 1 280 Homeobox Transcription Factor Family AT1G62990 78.767 5.71e-170 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma01g02159 KNOX2 5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02159 - - gmx:100808872 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02159 01 56880966 56887718 Gma01g02159 01 56880966 56887718 ECH
Gma01g02159 01 56880966 56887718 Gma11g00246 11 1966141 1972258 GST
Gma17g01232 17 10863166 10868714 Gma01g02159 01 56880966 56887718 PCT
Gma05g00479 05 4545932 4551950 Gma01g02159 01 56880966 56887718 PCT