Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02155 ATGGCCTCCATTCTTCAATTGCTGATGTTTGCTTTTACAATGATGTTCACGTTCATGGGAGAGCGAGCAGTAGCTGGGGGAATATTTCGACCCAGTCAATGGGCTCTTGCCCATGCCACCTTTTATGGTGATGAGACTGCTTCTGCCACTATGGGAGGAGCATGCGGATACGGGAATTTGTTTCAAAATGGTTACGGAACAGATACAGTGGCTTTAAGTTCGACCTTGTTCAACAATGGTTACACGTGTGGGACTTGTTATCAGATAAAATGCTACCAATCCAGTGCATGTTACAAAAATGTGGCCTTCACCACAGTAACTGCCACCAATCTTTGCCCTCCTAATTGGTCTCAACCCTCCAACAATGGTGGCTGGTGCAATCCTCCACGAGTGCATTTTGACATGTCCAAACCCGCCTTCATGAAAATCGCGCAGTGGAAAGCCGGAATCGTCCCAGTTATGTACCGCAGAGTGCCATGCATGAGGAGGGGAGGGCTTCGATTCTCTTTCCAAGGAAATGGGTACTGGCTGTTGGTATACGTGATGAACGTGGGAGGTGGAGGAGACATATCAAGCATGTGGGTGAAAGGAAGCAGAAGTGGATGGATTAGCATGAGCCACAACTGGGGGGCTTCTTATCAAGCATTTGCAACTCTAGGTGGCCAAGCTCTTTCTTTCCGAATTACTTCATACACCACCAGGGAGACTATTATTGCTTGGAATGTTGCTCCTTCCAATTGGAACGTTGGACTAACGTATTCCACCAACGTTAACTTCCGCTAA 783 0.4738 MASILQLLMFAFTMMFTFMGERAVAGGIFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTVALSSTLFNNGYTCGTCYQIKCYQSSACYKNVAFTTVTATNLCPPNWSQPSNNGGWCNPPRVHFDMSKPAFMKIAQWKAGIVPVMYRRVPCMRRGGLRFSFQGNGYWLLVYVMNVGGGGDISSMWVKGSRSGWISMSHNWGASYQAFATLGGQALSFRITSYTTRETIIAWNVAPSNWNVGLTYSTNVNFR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02155 260 SMART dpbb_1 69 155 IPR007112 -
Gma01g02155 260 PANTHER EXPANSIN 7 259 - -
Gma01g02155 260 Gene3D - 166 260 IPR036749 -
Gma01g02155 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Gma01g02155 260 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Gma01g02155 260 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Gma01g02155 260 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Gma01g02155 260 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Gma01g02155 260 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Gma01g02155 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Gma01g02155 260 PANTHER EXPANSIN-A15 7 259 IPR002963 GO:0009664
Gma01g02155 260 SUPERFAMILY Barwin-like endoglucanases 33 183 IPR036908 -
Gma01g02155 260 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Gma01g02155 260 Gene3D - 24 160 IPR036908 -
Gma01g02155 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Gma01g02155 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Gma01g02155 260 Pfam Lytic transglycolase 69 155 IPR009009 -
Gma01g02155 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Gma01g02155 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Gma01g02155 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Gma01g02155 260 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Gma01g02155 260 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Gma01g02155 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Gma01g02155 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 165 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02155 Gma-Chr1 56850278 56851866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02155 14 260 Expansin Gene Family AT1G12560 68.826 2.14e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02155 - - gmx:100807807 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02155 01 56850278 56851866 Gma01g02155 01 56850278 56851866 ECH
Gma01g02155 01 56850278 56851866 Gma11g00250 11 2008085 2009080 GST
Gma17g01237 17 10926292 10927924 Gma01g02155 01 56850278 56851866 PCT
Gma05g00485 05 4607506 4609356 Gma01g02155 01 56850278 56851866 PCT