Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02109 ATGGCTTCGAATCCTCCATTTCACATGGAGGATCAGACAGATGAGGATTTCTTTGATAAACTTGTTGAGGATGATATGGAGCCTGTAAAGTCTGGCCATGATGAAGGGGATGATTCCGATGAGGCTAAAGCATTTGCAAATCTGGGAATCAATGATGTTGATGCTGCTGAGAGTGGTATTGAAGTCAAAGGGGAATATGGTACTGTGGAATCCGATGCAGGACTTGAACAGGAGGGGAATTTGTTGCCCTCCTCTAGTTCAGTTGGGTTTGATAATAAGGTGGGTCCTGGTGAGGATGGGATTGGGGTGGGATCAGAAGTCACGTCCGCTTCAGCTGTAGGCACGAGCGATAAAGTCAGTAGTTCTGAGGTTAAGGAGGTGGGTTGGAATTCTTTTCATGCTGATTTGAATGGAGGCGGCGGGTTTGGATCATATTCTGACTTTTTCAGTGAGTTGGGAGATCAGTCTGGGGATTTTCTGGGGAATGTGTATGATAATTTAAGTAGTGAGGTGAAGCCTGGTAATGAAGTTCAAAACGATGGCTCAAATGCCTTAAGTAATTATGTGCAATATCATGAGGGTCAAGGTTATGATGGATCTTTAGAAAGCCACACAAACAGGCTAGGTGATGGGTTAAATGCTTCAGCTAATCATGTACAATATCAAGAGGGTGAAACTTATGTTGCATCTTCAGAAGAACACCCAAATGGACAAGATCTGAGTAGTAGTCAGTATTGGGAGGATCTTTATCCTGGCTGGAAGTATGACCACAACACTGGGCAATGGTATCAAATAGATGGCTATATTGTAACTTCCACTACTCAGCAAAGCTCTGAAGCCAATACAGCTGCGGATTTGAGTGCTGCTTCTGATGGGAAAACAGAGATCTCTTACATGCAGCAAACTGCTCAATCTGTTGCAGGAACTTTAGCTGAATCCGGCACAACTAAAAATGTATCTAGCTGGAGTCAGGTTTCAGAAGGGAATAATGGGTATCCAGAGCATATGATTTTTGATCCTCAGTATCCTGGTTGGTATTATGACACAATTGCCCAAGAATGGCGTTCATTGGAAACTTACAATTCAACCATCCAGTCTTCTAGTCTTGGACTTGAAAATGGGCATGCTTCTGCCAATACTTTCTCGCCCAATGATAATAGTTTGTATAGCGAATACAGCCAAACTGATAATTATGGAATACAGGGAATTGATAGTCAGCCTGTAGATGGCAGCTGGAGTGGTTTGTATGGCACTAACCATCAGCAGGGTTTTGACATGTACACAACTGGGTCTGTCACTACTAGAGGGGATAATATAACTTCGGGTGGCAACCAACAAATTAATCATTCTTATGGTTCAAGTATTTCTGCAAACAAAGATCAACAAAATACTTCTAGTTCTTTTGGATCTGTTGCATTGTACAATAGAGTAAACCATGATCTTGGTTTGGCTAATGGAACTTTTGAACCACAAAGCTTTGGCCCTACTGGGGACACTGTTCAACAGTTTAATTATTCAACCACAAAGTTCGGGGAGCAAAAAGTATTTTCAAATGATTTTACTGAAAATAAAAAACCCTTTAGTTATTCTCCACAATCAATTCATGGTGAGCATCAGTACTCACATGCCCCTCAGGTTGGGAGATCATCAGCTGGGCGTCCTTCTCATGCCCTGGTAACTTTTGGATTTGGGGGGAAACTCATCATAATGAAAGATCCTAATCTTTTGAGCTCATCATATGGACGCCAGGATTCTGTACAAGGTTCCATTTCTGTGTTGAACTTGATTGAAGTTGTCACGGGAAATATGGATTCTTTGAGCATCGGAAATAATACCAGTAATTATTTCCGTGCTCTGAGCCAGCAATCATTCCCAGGTCCGTTGGTTGGCGGTAGTGTTGGAAATAAGGAACTGTACAAATGGTTAGATGAGAGGATTACACACTGCGAATCACCTGACATGGATTATAAGAAAGGTGAAAGGTTGAGACTCCTTCTTTCCTTGCTTAAAATAGGTTGCCAACATTATGGAAAGCTACGTTCTGCTTTTGGTACAGGCACCATACTAAAAGAAAATGCTACTCCTGAGTCAGCAGTTGCAAAACTTTTTGCATCAGCCAAGACGAGTGGCACAGAGTTCCCTCAATATGGGATGCCAAGCCACTGCTTGCAAAATTTGCCTTCTGAAGGACAAATGAGGGCAATGGCTTCTGAGGTTCAAAATCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTGGCTTCACAACTTGGCGAACAGTTCTATGTTGATACAGTGAAGCAAATGGCACTTCGCCAGCTGGTTGCAGGGTCACCTTTGCGCACTTTATGCCTTCTAATTGCTGGGCAACCTGCTGAAGTTTTCTCTACTGATACCTCAATTAGTGGGCATCCTGGTGCTTCTAATATGGCTCAGCAGTCTCCTCAGGTTGGATCCAACGGCATGCTTGATGATTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAGATGATGAACTTGTAATTATTCACCTAGGTGATTGCTTGTGGAAGGAAAGAAGTGAGATTACTGCCGCACACATCTGCTATTTAGTTGCTGAAGCAAACTTTGAGTCATACTCAGATAGCGCAAGACTCTGTCTAATTGGAGCAGATCACTGGAAATGTCCTCGAACTTATGCTAGTCCAGAGGCTATCCAGAGGACCGAGTTATATGAATATTCAAAGGTGGTTGGAAACTCTCAGTTTACTTTGCATCCATTTCAGCCATATAAGCTTATATATGCATTTATGCTAGCTGAAGTGGGGAAGGTTTCAGACTCACTGAAGTACTGCCAAGCACTACTGAAATCCTTGAAAACTGGCCGTGCTCCAGAAGTAGAGTCATGGAAGCAGTTAGCACTATCTCTTGAGGAGAGGATTAGAATTCACCAACAGGGTGGATATGCTGCAAATTTAGCTCCTGCAAAATTAGTTGGCAAATTGCTCAACTTTTTTGATAGCACTGCACATCGAGTTGTTGGTAGTTTACCACCGCCTGCTCCTTCGTCATCACAAGGAACTGTTCATGGAAGTGAACAACAATTCAAAAATATGGCACCCAGAGTATCCTCTAGCCAATCAACAATGTCTTTGGCTCCATCTGCTTCAATGGAACCTATTAGTGAGTGGACAGCTGACAATAATAGAATGGCAAAGCCTAATAGAAGTGTTTCTGAGCCAGATTTTGGTAGAACCCCAAGACAGGAAACGATGTCACCTGATGCACAAGGAAAAGCACAGGCATCAGGAGGTACATCTCGCTTTTCCCGCTTTGGTTTTGGCTCACAACTTTTGCAAAAGACGGTAGGGCTAGTCTTGAAGCCTCGCTCTGGTAGACAGGCTAAATTGGGTGAGAAAAACAAGTTCTATTATGATGAGAAGCTGAAGAGATGGGTGGAAGAAGGTGCTGAACTTCCAGCTGAAGAAGCTGCTGCTCTGCCACCGCCTCCAACAACTGCTGCTTTCCAGAATGGTTCAGCTGAATACAACTTGAGATCTGCATTGAAGACTGAAAGTTCACCTCCTATTGAGGGCTCTAACATAAGAACTTCTAGCCCTGAACTTAGTCCAGGGATGCCACCGATACCACCCAGCGCAAATCAATTCTCAGCCCGGGGTCGTTTGGGTGTTCGATCAAGGTATGTTGACACCTTTAACCAAGGTGGTGGAACCTCTGCAAACTTGTTTCAGTTCCCTTCTGTTCCATCTGTGAAACCAGCTGTTGCTGCCAATGCGAAGTTTTTCGTTCCTACTCCCGCACCATCAAATGAGCAGACAATGGAGGCTATAGCAGAAAGCAAGCAAGAAGATAGTGCAACAAATGAGTGTTCATACCAATCCCCTAAATCATCAACGACCATACAAAGGTTTCCAAGTTTGGGTAACATCTCAAACCAGGGAGCAACAGATGGAAATAACTCTCATTTACCTCATTCACGCCGAACAGCTTCATGGAGTGGGAGTTTTAATGATTCATTTACCCCTCGAAAAATGGGCAATATTAAACCTTTAGGGGAATCTTTGGGCATGCCCCCGTCTAGATTTTTGCCTGATGAATCTTTAATGCGTACACATGTGAAAAGTAGCAGTTATGGAGAAGATCTTCAAGAGCCGCAGCAAGTGATCGAAGCGAAAAGAGAGAAATTCATCGTCGCAGTAATCATGGGTAAGGTTCATGGATCACTTGCACGTGCTGGTAAGGTTAGAGGGCAAACCCCGAAGGTGGCCAAGCAGGATAAGAAGAAGAAGCCACGTGGCCGCGCCCACAAGAGGATGCAGTACAATCGCCGATTCGTCACCGCCGTGGTGGGATTCGGCAAGAAGAGGGGACCCAACTCGTCTGAGAAGTGA 4443 0.4387 MASNPPFHMEDQTDEDFFDKLVEDDMEPVKSGHDEGDDSDEAKAFANLGINDVDAAESGIEVKGEYGTVESDAGLEQEGNLLPSSSSVGFDNKVGPGEDGIGVGSEVTSASAVGTSDKVSSSEVKEVGWNSFHADLNGGGGFGSYSDFFSELGDQSGDFLGNVYDNLSSEVKPGNEVQNDGSNALSNYVQYHEGQGYDGSLESHTNRLGDGLNASANHVQYQEGETYVASSEEHPNGQDLSSSQYWEDLYPGWKYDHNTGQWYQIDGYIVTSTTQQSSEANTAADLSAASDGKTEISYMQQTAQSVAGTLAESGTTKNVSSWSQVSEGNNGYPEHMIFDPQYPGWYYDTIAQEWRSLETYNSTIQSSSLGLENGHASANTFSPNDNSLYSEYSQTDNYGIQGIDSQPVDGSWSGLYGTNHQQGFDMYTTGSVTTRGDNITSGGNQQINHSYGSSISANKDQQNTSSSFGSVALYNRVNHDLGLANGTFEPQSFGPTGDTVQQFNYSTTKFGEQKVFSNDFTENKKPFSYSPQSIHGEHQYSHAPQVGRSSAGRPSHALVTFGFGGKLIIMKDPNLLSSSYGRQDSVQGSISVLNLIEVVTGNMDSLSIGNNTSNYFRALSQQSFPGPLVGGSVGNKELYKWLDERITHCESPDMDYKKGERLRLLLSLLKIGCQHYGKLRSAFGTGTILKENATPESAVAKLFASAKTSGTEFPQYGMPSHCLQNLPSEGQMRAMASEVQNLLVSGKKKEALQCAQEGQLWGPALVLASQLGEQFYVDTVKQMALRQLVAGSPLRTLCLLIAGQPAEVFSTDTSISGHPGASNMAQQSPQVGSNGMLDDWEENLAVITANRTKDDELVIIHLGDCLWKERSEITAAHICYLVAEANFESYSDSARLCLIGADHWKCPRTYASPEAIQRTELYEYSKVVGNSQFTLHPFQPYKLIYAFMLAEVGKVSDSLKYCQALLKSLKTGRAPEVESWKQLALSLEERIRIHQQGGYAANLAPAKLVGKLLNFFDSTAHRVVGSLPPPAPSSSQGTVHGSEQQFKNMAPRVSSSQSTMSLAPSASMEPISEWTADNNRMAKPNRSVSEPDFGRTPRQETMSPDAQGKAQASGGTSRFSRFGFGSQLLQKTVGLVLKPRSGRQAKLGEKNKFYYDEKLKRWVEEGAELPAEEAAALPPPPTTAAFQNGSAEYNLRSALKTESSPPIEGSNIRTSSPELSPGMPPIPPSANQFSARGRLGVRSRYVDTFNQGGGTSANLFQFPSVPSVKPAVAANAKFFVPTPAPSNEQTMEAIAESKQEDSATNECSYQSPKSSTTIQRFPSLGNISNQGATDGNNSHLPHSRRTASWSGSFNDSFTPRKMGNIKPLGESLGMPPSRFLPDESLMRTHVKSSSYGEDLQEPQQVIEAKREKFIVAVIMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02109 1480 MobiDBLite consensus disorder prediction 1 40 - -
Gma01g02109 1480 Pfam Vesicle coat trafficking protein Sec16 mid-region 556 677 IPR024340 -
Gma01g02109 1480 MobiDBLite consensus disorder prediction 1295 1355 - -
Gma01g02109 1480 MobiDBLite consensus disorder prediction 1430 1457 - -
Gma01g02109 1480 Pfam Sec23-binding domain of Sec16 739 996 IPR024298 -
Gma01g02109 1480 PANTHER SECRETORY 16, ISOFORM I 1 1399 - -
Gma01g02109 1480 MobiDBLite consensus disorder prediction 1200 1218 - -
Gma01g02109 1480 MobiDBLite consensus disorder prediction 1048 1085 - -
Gma01g02109 1480 MobiDBLite consensus disorder prediction 1200 1233 - -
Gma01g02109 1480 CDD ACE1-Sec16-like 624 995 - -
Gma01g02109 1480 MobiDBLite consensus disorder prediction 1048 1121 - -
Gma01g02109 1480 MobiDBLite consensus disorder prediction 1092 1121 - -
Gma01g02109 1480 MobiDBLite consensus disorder prediction 1440 1457 - -
Gma01g02109 1480 Pfam Ribosomal protein S30 1421 1477 IPR006846 GO:0003735|GO:0005840|GO:0006412
Gma01g02109 1480 Gene3D - 551 977 - -
Gma01g02109 1480 PANTHER RGPR-RELATED 1 1399 IPR024880 GO:0006914|GO:0048208
Gma01g02109 1480 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02109 Gma-Chr1 56433089 56442767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02109 1419 1480 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 96.774 1.02e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02109 K20353 - gmx:100795588 2761.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02109 01 56433089 56442767 Gma11g00301 11 2422891 2430704 GST