Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02107 ATGGAGCGGTACAAATGCAAGCTCTGCTCCAGAACATTCTCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTCCCTCTTCCCCCCCAAAACCAACAACCACCACTTTCTCCCTCTGCTGCTGCTTCCTTCTCTTCTAATTCCTCTTCAGAACAAGAACAAGCCACACACGATGAAAAGTCCCTGATTTATGGGTTAAGAGAGAATCCCAAGAAATGCTTCAGGCTCGCAGATCCCGAGTTTGACACGGGCTCTGTCGTTCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCGACGATCCAAGCGAACCCGAAGGCCCGTGAATTTGGAACAAAAAAAGCCCAAACTGAGTTTCATGGAGTCGCCTGAGCCCGTGAGTTCGGTCTCCGACACTTCCCCCGAGGAAGATGTCGCCATGTGTCTCATGATGTTGTCGAGAGACCGATGGAGTAAGAACAACAACATCAACGTTGTTAATGTTAATGATGAGGATGTTGTCGAAGAGGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGGTGGGAGATCAGTACTAGAGATAAAGTTGAGGAGAGTTCGCGGGAAGCACCAGTGTCAGAGCTGCGGGAAGACGTTTCGATCTTCACGCGCATTGGGCAGTCACAGAAGCATTTGCGAAGGTTCGGGTAACGATAGTAAAATCTTCCAATGCCCCTTTTGTTCCAAGGTGTTTGGGTCTGGTCAAGCACTTGGTGGCCACAAGAGATCTCACCTCATGCCTTCTTCTTCCACAACCGCTAATAATGATTCTGTTAGATTGAAAGAGAGCTTCATAGATCTCAACTTGCCAGCTCCGCCCGAAGATGACGACCTTAGTGTTGTTTCTGATGCCTGA 897 0.4983 MERYKCKLCSRTFSNGRALGGHMKAHLATLPLPPQNQQPPLSPSAAASFSSNSSSEQEQATHDEKSLIYGLRENPKKCFRLADPEFDTGSVVQDRESETESKNPTRRRSKRTRRPVNLEQKKPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNNNINVVNVNDEDVVEEEEEEEEEEEEGGRSVLEIKLRRVRGKHQCQSCGKTFRSSRALGSHRSICEGSGNDSKIFQCPFCSKVFGSGQALGGHKRSHLMPSSSTTANNDSVRLKESFIDLNLPAPPEDDDLSVVSDA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02107 298 MobiDBLite consensus disorder prediction 29 68 - -
Gma01g02107 298 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Gma01g02107 298 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 298 - -
Gma01g02107 298 Coils Coil 167 187 - -
Gma01g02107 298 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gma01g02107 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gma01g02107 298 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 298 IPR044303 GO:0006355
Gma01g02107 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 233 IPR013087 -
Gma01g02107 298 SUPERFAMILY beta-beta-alpha zinc fingers 204 258 IPR036236 -
Gma01g02107 298 MobiDBLite consensus disorder prediction 89 141 - -
Gma01g02107 298 SMART c2h2final6 204 224 IPR013087 -
Gma01g02107 298 SMART c2h2final6 4 26 IPR013087 -
Gma01g02107 298 SMART c2h2final6 236 258 IPR013087 -
Gma01g02107 298 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Gma01g02107 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Gma01g02107 298 MobiDBLite consensus disorder prediction 41 57 - -
Gma01g02107 298 Gene3D Classic Zinc Finger 201 258 - -
Gma01g02107 298 MobiDBLite consensus disorder prediction 89 105 - -
Gma01g02107 298 Pfam C2H2-type zinc finger 236 259 - -
Gma01g02107 298 Pfam C2H2-type zinc finger 204 223 - -
Gma01g02107 298 Pfam C2H2-type zinc finger 3 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02107 Gma-Chr1 56407909 56409075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02107 1 295 C2H2 Transcription Factor Family AT3G60580 36.826 1.39e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma01g02107 zf-C2H2_6 7.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02107 - - gmx:100815124 486.878