Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02088 ATGCGTTGGTTTCCGTTGAGTACAACTTCAAACTCGGAGAGAGAACGGAATAGAGAGAACACTACTCGTGCTTCGGTGTATCTCAATGTATATGATCTTACTCCCATAAACAATTACCTTTACATGCTTGGCCTTGGAATTTTTCATTCGGGTATACAAGTGCATGATATTGAATATGGCTTTGGGGCACATGAATATCCAAGTAGTGGTGTGTTTGAGGTGGAACCTAGAAGCTGCCCTGGCTTCATCTTTAGACGATCAGTGTTGTTGGGCAGCACTGATATGTCTAACTCAGAATTTCGATATTTCATAGAGCGCCTGTCTGCAAAATATCATGGAGACACTTATCATCTTATTGCCAAAAACTGCAACCATTTTACGGATGAAGTTTGCCAGCATCTAACAGGAAGTCCTATCCCTGGATGGGTAAATCGGATGGCTCGTGTAGGTTCTTTCTGCAATTGTCTTCTGCCAGAAAGCCTCCAGGTTGCTGCAGTTAGACATCTCCCTGAACGTGTTGCATTTGATGATGATGATGGATCAGGATCTGATGGCCTTTCTGCATCCATTGAGAGTGAAGAAGATGAGCCCAATCACCATTTTTTAACTTCACCAAATGATTCATTTGTTTATTCTTGGTCTTCGTCCCCCACCAATAAGTCTCAAGTGATGGGTGCATTCATCTTCCTTTTCCTCTTGTGTGTTTTCTGCTTCCAAAGTAAGGTGACCTATGCTACAAGGTGTGGAGATGCAGGCCCTGAAATCCACTATCCATATCAGATAAAAGGTCAACAGCAACAGCATAAGTCCCTTCCTGGTTTTGAGCTTCTTTGCAAAGACAACCTCACCACTATCCACTTTCCATCTTATGGTGATTTGGTAGTGAAGTCCATTTCCTATGACACCAAAAACATTCACCTCCTTGACCCCAAAAACTGTGCCCATCATGTCTTTCTCAACCTCAATCTCTCCCTCACACCGTTCCACTATTTTTATGTTCTGAAAAACTACACATACCTCAATTGCTCCACCACCCTTCCACATCCTCTCGTGGAGGTTCCGTGTTTAAGTGCTTCAAGCTATCATGTATACACAGTTGACCCTGCAGTGCCTGTGCCGGGTTCATGTGATGGAGTCAAAACCGTAGCCATTCCTTTTgcatatagcccttatctctcagacaaaagtcttggtcttagattaacatggcacttgcgtgaacctctagacaacgaagcagcagtgaACCGGACTAGAGGTTCCTACAAATCGCGTAATATAGTTATAGGCTCTAGCATCTGTGTTTTCGTGATGGCCATGCTATTGCTTATAAGCATGAAGGTTCGTGGTGCCACGAGGAACCTCCATCAGAAAGAAGGACAGTTATTGCAGAGCTAA 1398 0.4084 MRWFPLSTTSNSERERNRENTTRASVYLNVYDLTPINNYLYMLGLGIFHSGIQVHDIEYGFGAHEYPSSGVFEVEPRSCPGFIFRRSVLLGSTDMSNSEFRYFIERLSAKYHGDTYHLIAKNCNHFTDEVCQHLTGSPIPGWVNRMARVGSFCNCLLPESLQVAAVRHLPERVAFDDDDGSGSDGLSASIESEEDEPNHHFLTSPNDSFVYSWSSSPTNKSQVMGAFIFLFLLCVFCFQSKVTYATRCGDAGPEIHYPYQIKGQQQQHKSLPGFELLCKDNLTTIHFPSYGDLVVKSISYDTKNIHLLDPKNCAHHVFLNLNLSLTPFHYFYVLKNYTYLNCSTTLPHPLVEVPCLSASSYHVYTVDPAVPVPGSCDGVKTVAIPFAYSPYLSDKSLGLRLTWHLREPLDNEAAVNRTRGSYKSRNIVIGSSICVFVMAMLLLISMKVRGATRNLHQKEGQLLQS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02088 465 SMART DUF862_2a 24 162 IPR008580 GO:0008233
Gma01g02088 465 Pfam Wall-associated receptor kinase galacturonan-binding 247 309 IPR025287 GO:0030247
Gma01g02088 465 Gene3D PPPDE domains 19 168 IPR042266 -
Gma01g02088 465 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 2 207 - -
Gma01g02088 465 MobiDBLite consensus disorder prediction 175 198 - -
Gma01g02088 465 Pfam PPPDE putative peptidase domain 25 159 IPR008580 GO:0008233
Gma01g02088 465 ProSiteProfiles PPPDE domain profile. 24 161 IPR008580 GO:0008233
Gma01g02088 465 PANTHER DESUMOYLATING ISOPEPTIDASE 2 207 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02088 Gma-Chr1 56242217 56247559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02088 239 420 C3H Transcription Factor Family AT2G25410 29.167 8.68e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02088 K22763 - gmx:100790327 496.123