Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02045 ATGGCGCTTTATCTTTTCTGTCTTCTTCTTGCTATCACCTTCATTTTCATGCAAACTCTGGCAGATACTTCATGCACTGATTTTGGTGCATGTGGGTTTGGTTCCTTTGGTGCTACAGTCAATGGTGGAGATGTATCAGCTGCATCTTCTCTTTATCGAAATGGTGTTGGTTGTGGTGCCTGTTACCAGgtgaggtgtaccaacagtgtatattgctcagaaaatggtgtgactgcagttataaccgaccaaggttcaagtgataacactgatttcattcttagcaaacatgcctttagccggatggctcaaaccactgatgcagctgcttctctattagcccttggcgtggttgatattgaatatagacgtgttgcatgcagctacccagataaaaacataacaatcaagatagatgagagcagcaacaacccatattacttggcttttgtcatttggtatcaacaaggaaggagagacataactgctgtgcagctctgtgagactcaaaactttgtgtgccagttactggataggagccatggggcagtgtggactactacctctccaccgagtggacccttgtctttaaggatgttatttagtgatgaagaagagggagaagaaacatgggttgttcctgttaataacatacccggagactggaaggctggtgaaacatacgattcaggggtacaagtgaaccaatag 711 0.1153 MALYLFCLLLAITFIFMQTLADTSCTDFGACGFGSFGATVNGGDVSAASSLYRNGVGCGACYQVRCTNSVYCSENGVTAVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIEYRRVACSYPDKNITIKIDESSNNPYYLAFVIWYQQGRRDITAVQLCETQNFVCQLLDRSHGAVWTTTSPPSGPLSLRMLFSDEEEGEETWVVPVNNIPGDWKAGETYDSGVQVNQ 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02045 236 PANTHER EXPANSIN-B3 22 235 - -
Gma01g02045 236 SUPERFAMILY PHL pollen allergen 132 230 IPR036749 -
Gma01g02045 236 Pfam Lytic transglycolase 48 122 IPR009009 -
Gma01g02045 236 PRINTS Expansin/Lol pI family signature 27 45 IPR007118 GO:0005576
Gma01g02045 236 PRINTS Expansin/Lol pI family signature 115 131 IPR007118 GO:0005576
Gma01g02045 236 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Gma01g02045 236 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 132 IPR007112 -
Gma01g02045 236 Gene3D - 129 234 IPR036749 -
Gma01g02045 236 Pfam Expansin C-terminal domain 134 213 IPR007117 -
Gma01g02045 236 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 146 230 IPR007117 -
Gma01g02045 236 Gene3D - 13 128 IPR036908 -
Gma01g02045 236 PANTHER EXPANSIN-LIKE B1 22 235 - -
Gma01g02045 236 SUPERFAMILY Barwin-like endoglucanases 21 131 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02045 Gma-Chr1 55834197 55836086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02045 22 232 Expansin Gene Family AT4G17030 43.868 3.66e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02045 - - gmx:100794009 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02045 01 55834197 55836086 Gma01g02045 01 55834197 55836086 ECH
Gma01g02045 01 55834197 55836086 Gma11g00369 11 3021842 3023878 GST
Gma01g02045 01 55834197 55836086 Gma17g01388 17 12852727 12854959 PCT
Gma01g02045 01 55834197 55836086 Gma05g00650 05 7177904 7180178 PCT
Gma17g01388 17 12852727 12854959 Gma01g02045 01 55834197 55836086 PCT
Gma05g00650 05 7177904 7180178 Gma01g02045 01 55834197 55836086 PCT