Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02018 ATGGATTCTCGTGAACAGCCTCAGCCACAACCGCCAAACATGATGGTGGGACCCACCGTGTACCCTTCGATGTTGGCCCCCGCCACCGCTAGATTCCCTTACAGCAACAACAACAACAACAACAGCAATCCTCCTCCTCCTTCTTCGGAGCCTCTCAACAGCGACGCCAACACCAACCATAATAACAGCACGTTCGAGGCGTTGAAGCCTTGTGCGCTGGCCGCCTCGGAATCGTCGAAGAAGAAGCGGGGCCGGCCCAGAAAATACTCGCCCGATGGCAACATTGCGTTGGGCCTGGGCCCAACTCACGCCCCCGCTTCCTCCGCCGACCCCCCCGCCAAAAAACACCGCGGTCGCCCCCCTGGCTCCGGCAAGAAACAGATGGATGCTCTCGGCATTCCTGGAACTGGTTTTACTCCCCATGTTATCACCGCCGAAGTTGGCGAGGATATTGCTTCAAAGCTTGTGGCCTTTTGTGAGCAAGGACGTCGGACAGTTTGCACCCTTTCTGCTTCTGGTGCAATCCGCAATGTCACCATTCGAGCACCAGACATGCCTGCTGGTATTCTGGCCTATGAGGGTCAATTTGAGATCATATCACTTAAAGCTGCTACGCTACAATCTGACAATAACAGAATGGCTGCCTTGAGTGTGAGCATAGCAGGTCCTGATGGACGATTATTGGGTGGCGAAGTTGTTGGAGCCCTTACTGCAGCAACGGCGGTGCAGGTAATTCTGGGTAGCTTTATTGCTGATGGAAAAAAGTCTAGCTCAAGTAACCTGAAATCTGGACGTTCTTCGACGCCATCATCTCAGATGTTAGCCTTTGGTGCTTCTCCGACTCCAACTACGCCTACCTCTCTAGGGCCTTCAACTGATTCATCTGAGGATAATGAGAATAGTCATTTTAGTAAGGGGCCAGGTGGCTCAGGACTCTACAATAATAATGCTAGTCAGCCCATTCATACCATGCCCATGTACCAACATCAACTATGGGCTGGCCATACTCAGCAGTGA 1017 0.5261 MDSREQPQPQPPNMMVGPTVYPSMLAPATARFPYSNNNNNNSNPPPPSSEPLNSDANTNHNNSTFEALKPCALAASESSKKKRGRPRKYSPDGNIALGLGPTHAPASSADPPAKKHRGRPPGSGKKQMDALGIPGTGFTPHVITAEVGEDIASKLVAFCEQGRRTVCTLSASGAIRNVTIRAPDMPAGILAYEGQFEIISLKAATLQSDNNRMAALSVSIAGPDGRLLGGEVVGALTAATAVQVILGSFIADGKKSSSSNLKSGRSSTPSSQMLAFGASPTPTTPTSLGPSTDSSEDNENSHFSKGPGGSGLYNNNASQPIHTMPMYQHQLWAGHTQQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02018 338 MobiDBLite consensus disorder prediction 254 320 - -
Gma01g02018 338 Gene3D - 140 262 - -
Gma01g02018 338 ProSiteProfiles PPC domain profile profile. 135 271 IPR005175 -
Gma01g02018 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 303 IPR039605 GO:0003680
Gma01g02018 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 250 - -
Gma01g02018 338 MobiDBLite consensus disorder prediction 1 134 - -
Gma01g02018 338 SMART AT_hook_2 80 92 IPR017956 GO:0003677
Gma01g02018 338 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Gma01g02018 338 CDD DUF296 139 249 IPR005175 -
Gma01g02018 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 36 303 - -
Gma01g02018 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 249 IPR005175 -
Gma01g02018 338 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02018 Gma-Chr1 55611603 55615055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02018 77 338 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 42.308 2.10e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02018 - - gmx:100788026 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02018 01 55611603 55615055 Gma11g00392 11 3183029 3187015 GST
Gma01g02018 01 55611603 55615055 Gma17g01420 17 13342884 13348596 PCT
Gma01g02018 01 55611603 55615055 Gma05g01128 05 32213118 32218221 PCT
Gma17g01420 17 13342884 13348596 Gma01g02018 01 55611603 55615055 PCT
Gma05g01128 05 32213118 32218221 Gma01g02018 01 55611603 55615055 PCT