Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02016 ATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAACCTATCACAAACCCAACACCCCAAAAACCCACAACCTCCTCAACCAAAAAACCCTAACACCACCACCACCTCCTCTTCTACTTGGATGTGGAACCCTAGGGAGCAACAACAGCAGCAGGTAGAAGATGATGATGACTCCTGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGCACCACATGGCCTCCTAGGTCCTACACCTGCACCTTCTGCAGAAGGGAGTTTCGCTCCGCCCAAGCCCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGGGCCCGCCTCCACCAAGCTCCACCTTCCTCCTGCTCCAACCCCATGTCCTCTTCTCTTCCCACTTCATCCTTCATCAATATCCCTCCTCAAGAGCTTGTTGGAAATGCTGGCTTGTGCCTCCTCTACCACTTGCCCACGAGCCCTAGTAGTGCACCACCCTTCCCTTCACCCACTTCTAATGGGGCTTCTCCCTCCACTCTTCTCTCTATCTCCTCCTATCCTACAAACAACTTTCTGATGCAAACTTCCTTTAATTTTCCCGGTGCACCCCCAACTGGGATCAATACTACTACTGTTTCCTCTTTGTGCTATAACTCTAGCAAAGTGGAACAATCCGCAACTTCTTCCTCTATTGATAATGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGGCACAAACCAACACCAACCTCATAA 753 0.5219 MAAEIGLVSMTQIQNLSQTQHPKNPQPPQPKNPNTTTTSSSTWMWNPREQQQQQVEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPPSSCSNPMSSSLPTSSFINIPPQELVGNAGLCLLYHLPTSPSSAPPFPSPTSNGASPSTLLSISSYPTNNFLMQTSFNFPGAPPTGINTTTVSSLCYNSSKVEQSATSSSIDNGHLEELDLELRLGHKPTPTS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02016 250 MobiDBLite consensus disorder prediction 33 51 - -
Gma01g02016 250 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Gma01g02016 250 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 44 243 - -
Gma01g02016 250 Pfam C2H2-type zinc finger 84 108 - -
Gma01g02016 250 PANTHER OS07G0101800 PROTEIN 44 243 - -
Gma01g02016 250 SMART c2h2final6 84 106 IPR013087 -
Gma01g02016 250 Gene3D Classic Zinc Finger 75 127 - -
Gma01g02016 250 SUPERFAMILY beta-beta-alpha zinc fingers 81 111 IPR036236 -
Gma01g02016 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Gma01g02016 250 MobiDBLite consensus disorder prediction 8 22 - -
Gma01g02016 250 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02016 Gma-Chr1 55574414 55575166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02016 39 246 C2H2 Transcription Factor Family AT4G17810 42.326 7.10e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma01g02016 zf-C2H2_6 5.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02016 - - gmx:100818142 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02016 01 55574414 55575166 Gma01g02016 01 55574414 55575166 ECH
Gma01g02016 01 55574414 55575166 Gma11g00394 11 3219692 3220474 GST
Gma01g02016 01 55574414 55575166 Gma17g01424 17 13411372 13412067 PCT
Gma01g02016 01 55574414 55575166 Gma05g01125 05 32105562 32106236 PCT
Gma17g01424 17 13411372 13412067 Gma01g02016 01 55574414 55575166 PCT
Gma05g01125 05 32105562 32106236 Gma01g02016 01 55574414 55575166 PCT