Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02012 ATGGAGAATAATAACACATCGATGGACGCATCAGAAGCCAGCTGGTTATCTGATTTGCTGTTGCAGGAAACGGAGGATGGTTGCAACTTGTTCCGACAATGTCACCTTGAGACGTTGCTCGACGATGATGAAGAGTTGCTTTCGCATGAGATAGCAAGTGCCTTTGAGAACTTGCAGCAACCTTTGTCTTCGGAGAGTAACACTTCGTATTCGGAGGCTCCGATGAACTCATTCACGGAAGAAACAAGTTTTGAGAAGCCCATCAAGCAGCCCAAAACGAATGCCTCTAGTTGGAACTCATCGTTCACTAAGCATTTTTCGTTATCTTCATCCCCTTCTTCTCCAACCTCCAAGATCCTGTCTTTCGAGAACTCAAACTCGTCCCCTCCCAATCCCAACAACACCGATCAGTTTCATGGTATTGTTGTTTCTTCTGCCTTAAGCCCAAAGCAGATCAAGACCAAAGGTGCTTCAGTTTCACTCCCACATACCCGGAAACGTTTATCAGAAAACCAGAACTTTGAAGCTGAAAGCCCCAAAGGCCATAGAAGCTACAAGTCCCCATCTCACGTTCGGGATCACATCATCGCCGAGAGAAAACGAAGAGAGAAGCTCAGCCAGAGCTTAATCGCTCTAGCAGCTCTTATTCCTGGCTTAAAGAAGATGGACAAGGCATCAGTGCTGGGAGATGCTATAAAGTACGTGAAAGAGCTCCAAGAGCGTATGAGAATGCTTGAAGAAGAGGACAAGAATAGAGATGTGGAGTCTGTGGTGATGGTGAAGAAACAACGGCTGAGCTGCTGCGACGATGGTTCAGCTTCACATGAAGATGAAGAAAACAGTGAAAGACTCCCCCGCGTGGAAGCGAGAGTGTTAGAGAAGGACGTGCTCCTTCGGATCCACTGCCAAAAGCAAAAGGGGCTTTTGCTCAACATACTTGTCGAGATTCAAAACCTTCATCTCTTCGTTGTCAATAGCAGTGTCCTACCTTTCGGGGATTCCGTACTTGACATAACCATTGTTGCTCAGATGGGAACCGGCTACAATTTGACCATAAATGATCTTGTAAAAAACCTACGCGTGGCTACTTTGAAATCCATGTCATAA 1107 0.4607 MENNNTSMDASEASWLSDLLLQETEDGCNLFRQCHLETLLDDDEELLSHEIASAFENLQQPLSSESNTSYSEAPMNSFTEETSFEKPIKQPKTNASSWNSSFTKHFSLSSSPSSPTSKILSFENSNSSPPNPNNTDQFHGIVVSSALSPKQIKTKGASVSLPHTRKRLSENQNFEAESPKGHRSYKSPSHVRDHIIAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELQERMRMLEEEDKNRDVESVVMVKKQRLSCCDDGSASHEDEENSERLPRVEARVLEKDVLLRIHCQKQKGLLLNILVEIQNLHLFVVNSSVLPFGDSVLDITIVAQMGTGYNLTINDLVKNLRVATLKSMS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02012 368 Pfam Helix-loop-helix DNA-binding domain 194 239 IPR011598 GO:0046983
Gma01g02012 368 MobiDBLite consensus disorder prediction 58 138 - -
Gma01g02012 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Gma01g02012 368 PANTHER PROTEIN, PUTATIVE-RELATED 8 366 - -
Gma01g02012 368 SMART finulus 195 244 IPR011598 GO:0046983
Gma01g02012 368 Gene3D - 183 253 IPR036638 GO:0046983
Gma01g02012 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 249 IPR036638 GO:0046983
Gma01g02012 368 Coils Coil 228 255 - -
Gma01g02012 368 MobiDBLite consensus disorder prediction 152 191 - -
Gma01g02012 368 PANTHER BHLH TRANSCRIPTION FACTOR 8 366 - -
Gma01g02012 368 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02012 Gma-Chr1 55530567 55533434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02012 116 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.622 5.00e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma01g02012 HLH 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02012 - - gmx:100816551 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02012 01 55530567 55533434 Gma11g00398 11 3262373 3264934 GST
Gma01g02012 01 55530567 55533434 Gma17g01429 17 13481040 13483540 PCT
Gma01g02012 01 55530567 55533434 Gma05g01121 05 31832034 31834228 PCT
Gma17g01429 17 13481040 13483540 Gma01g02012 01 55530567 55533434 PCT
Gma05g01121 05 31832034 31834228 Gma01g02012 01 55530567 55533434 PCT