Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02011 ATGACTACAAGGGAAGAATCATGGACAAGTTGGTTGTGTGATTTGGAACCTGAGGATTACAACAATTTCGTCCATCAATCTGACTCAAACGGGGTTGGTGGAATTTTCCCATCTAGCAAAGACTCTTCTTCAGCTTCTCAAACGGAACACTCTAGCACCGTGAGCAATTCCTCGGAAGATGATAAAGTCTTTGGTGAGAGACCAGCCAAAACACTCAAGATTGGCACTTCAAACTCTTCTAACACGGAGTTTCTCTCACAGAAGAAGGATTCTTCTCCCTCCTACATTATTTTCTCTGACAATGTGAATCAATTGCAAGCACCAACGTTGAAGCCAAAAGGCAAGGTTGCGTGTCACGGGAGAAAGGGGTCCTTGGAAAACCAGAACTTTGGCTCTGTGTCCAGATCTCCCCACCACGCTAAAGATCACATAATTGCTGAGAGAATGAGGAGAGAAAAGATTAGCCAGCAGTTCGTAGCTCTTTCAGCCCTTATTCCAGACCTCAAGAAGATGGACAAAGCCTCGGTGCTTGGGGATGCTATAAAGCACGTGAAACAGCTCCAGGAGCAAGTGAAGCTACTGGAAGAGAAGAACAAAAGGAAGCGGGTAGTGGAATCCGTGGTATATGTTAAGAAATCTAAGCTCTCCGCAGCAGAAGATGTCTTTAACACTTTTTCAAATTCTGGGGACGGAAATTCCTATGACATCTCAGAAACAAAAACAAATGAATCATTTCCCGAAGTTGAGGCAAGAGTGTTAGAGAAGCACGTGCTGATTCGAATCCACTGCGGGAAACAAAAGGGTCTGTTCATCAACATACTCAAAGATATAGAGAATCTTCACCTATCGGTGATCAATAGCAGTATTTTGCTTTTCGGAACCTCCAAATTGGACATAACTATCGTAGCAGAGATGGATGAAGAGTTCAGCCTGAGCGTGAAGGAGCTGGCTAGAAAACTACGAATTGGACTCATGCAATTTATGTAG 987 0.4377 MTTREESWTSWLCDLEPEDYNNFVHQSDSNGVGGIFPSSKDSSSASQTEHSSTVSNSSEDDKVFGERPAKTLKIGTSNSSNTEFLSQKKDSSPSYIIFSDNVNQLQAPTLKPKGKVACHGRKGSLENQNFGSVSRSPHHAKDHIIAERMRREKISQQFVALSALIPDLKKMDKASVLGDAIKHVKQLQEQVKLLEEKNKRKRVVESVVYVKKSKLSAAEDVFNTFSNSGDGNSYDISETKTNESFPEVEARVLEKHVLIRIHCGKQKGLFINILKDIENLHLSVINSSILLFGTSKLDITIVAEMDEEFSLSVKELARKLRIGLMQFM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02011 328 Coils Coil 177 204 - -
Gma01g02011 328 MobiDBLite consensus disorder prediction 24 87 - -
Gma01g02011 328 MobiDBLite consensus disorder prediction 72 87 - -
Gma01g02011 328 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 2 325 - -
Gma01g02011 328 PANTHER BHLH TRANSCRIPTION FACTOR 2 325 - -
Gma01g02011 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Gma01g02011 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 202 IPR036638 GO:0046983
Gma01g02011 328 SMART finulus 144 193 IPR011598 GO:0046983
Gma01g02011 328 Pfam Helix-loop-helix DNA-binding domain 143 188 IPR011598 GO:0046983
Gma01g02011 328 CDD bHLH_AtNAI1_like 138 213 - -
Gma01g02011 328 MobiDBLite consensus disorder prediction 24 59 - -
Gma01g02011 328 Gene3D - 137 208 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02011 Gma-Chr1 55522456 55523800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02011 9 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.527 6.98e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma01g02011 HLH 9.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02011 - - gmx:100816024 624.78