Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02010 ATGGAACAAATTAGCAGTGTCATCAAGTTTACAAAATTAATCTCTCTCTTCAATCTTCATCCTCTCGATCCGTCTTCTAATTTTCCAGTCAAGTGCCCTACACTACATCACATCAAATTAGTAGTAATTTCAAGAAAGATCATGGAAATTGCGTACAACTACTACTTGCCTGAACTTCAGGAAATTGAGGATCCAACCTTCTTTGATCAATACCAGATGGATTCATTTGCTTGTCCACTTGATGACTTTGACTTTGAGTCTTTCTCCGGTTCCCCTGAGAGCAACTCCTCATATCATTTCAACTCCGAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCATGATCAGTCTTTTACCCCTGCAAGACCAACCAAGAGGCTCAAGAACACTTGTGCCAGTGACTTCATTTCCCACAAGGTTTCTGCTTTTTCATCCTCCCAACTTATTTCCTTTGGGCACTTCAATGCCCCGTCACCATCACATGCTTCCCAGCAATTTCAAAACCTGGACTTCGATGAGAAAGCGTCTAGTGAGAACATGGATTTTGCAGCTTTCGTTTCTCAGGGTTCGTATGAGGACAAAAGTTTCCTAAGTTCTGATAATAGAACGAACCAGGTTGGCATAACCACTAGGAACCCAATCCAAGCTCAAGAGCACATAATAGCTGAAAGAAAACGAAGGGAAAATATCAGCAAGAGGTTCATCGCTCTTTCCGCTATCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTGTCAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACACTTGGATCGGGAGTGCTGGTGAAAAGATCTATTATCTTCGCTGATGATGAAACTTCTGACAGCCACTGTGAGCATTCACTCCCCGAAGTCGAAGTCAGGGTTTCTGGGAAAGACGTACTCATCAGAACTCAATGCGACAAACACAGTGGACATGCTGCAATGATACTCAGCGAATTAGAAAAGCTTTACTTCATTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGCAATAGCAAAACTGATGTCACTATTATTGCTCAGATGAACAAGGAAAACTGCATGACAGCAAAGGATCTCCTAGGAAGGTTGCGACAGGCTTTGGTCGGGCATAACTAG 1167 0.4353 MEQISSVIKFTKLISLFNLHPLDPSSNFPVKCPTLHHIKLVVISRKIMEIAYNYYLPELQEIEDPTFFDQYQMDSFACPLDDFDFESFSGSPESNSSYHFNSESTPNCFPAESHDQSFTPARPTKRLKNTCASDFISHKVSAFSSSQLISFGHFNAPSPSHASQQFQNLDFDEKASSENMDFAAFVSQGSYEDKSFLSSDNRTNQVGITTRNPIQAQEHIIAERKRRENISKRFIALSAILPGLKKMDKASVLGDAVKYVKQLQERVQTLEEQAAKRTLGSGVLVKRSIIFADDETSDSHCEHSLPEVEVRVSGKDVLIRTQCDKHSGHAAMILSELEKLYFIVQSSSFLPFGNSKTDVTIIAQMNKENCMTAKDLLGRLRQALVGHN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02010 388 PANTHER BHLH TRANSCRIPTION FACTOR 47 387 - -
Gma01g02010 388 SMART finulus 220 269 IPR011598 GO:0046983
Gma01g02010 388 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 47 387 - -
Gma01g02010 388 CDD bHLH_AtNAI1_like 216 288 - -
Gma01g02010 388 Coils Coil 253 273 - -
Gma01g02010 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 214 263 IPR011598 GO:0046983
Gma01g02010 388 Pfam Helix-loop-helix DNA-binding domain 217 264 IPR011598 GO:0046983
Gma01g02010 388 Gene3D - 209 278 IPR036638 GO:0046983
Gma01g02010 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 276 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02010 Gma-Chr1 55511428 55517186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02010 48 384 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.465 1.65e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma01g02010 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02010 - - gmx:100815491 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02010 01 55511428 55517186 Gma11g00399 11 3276624 3279067 GST
Gma01g02010 01 55511428 55517186 Gma17g01430 17 13503017 13506350 PCT
Gma01g02010 01 55511428 55517186 Gma05g01118 05 31772416 31776668 PCT
Gma17g01430 17 13503017 13506350 Gma01g02010 01 55511428 55517186 PCT
Gma05g01118 05 31772416 31776668 Gma01g02010 01 55511428 55517186 PCT