Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02009 ATGCGTGTCCTCTTTCTTTTTCTGTTTTTCCAGTTTCTCCATTTTCATTTCCCCAAAACCCTTTCAGCCCCAATCTCAGAGTACCGTGCCCTTCTCTCTCTCCGTTCAGCCATTACCGACGCCACCCCACCTCTTCTCACTTCGTGGAACTCCTCCACCCCTTACTGTTCCTGGCTCGGCGTCACCTGCGACAACCGCCGCCACGTCACCTCCCTAGACCTCACCGGCCTCGACCTCTCCGGCCCCCTCTCCGCCGACGTCGCCCACCTCCCATTCCTCTCCAACCTCTCCCTCGCCTCGAATAAGTTCTCCGGCCCCATTCCTCCCTCACTCTCCGCTCTCTCCGGCCTCCGCTTCCTCAACCTCTCCAACAATGTCTTCAACGAAACCTTCCCCTCGGAGCTCTCGCGCCTCCAGAACCTCGAGGTCCTCGACCTCTACAACAACAACATGACCGGCGTGCTTCCCCTCGCCGTCGCGCAGATGCAGAATCTTCGTCATTTGCATCTCGGCGGCAACTTCTTCTCCGGCCAGATCCCGCCGGAGTATGGACGCTGGCAGCGCCTCCAGTACCTCGCCGTCTCCGGCAACGAGCTCGAGGGGACTATCCCTCCGGAGATCGGAAACTTGTCCAGCCTCCGGGAGCTCTACATCGGCTACTACAACACCTACACCGGGGGCATTCCGCCGGAGATCGGAAATTTGTCGGAGCTGGTGAGGCTCGACGCCGCCTACTGTGGGTTGTCCGGCGAGATTCCGGCGGCGCTGGGAAAGCTTCAGAAGCTGGACACGCTGTTCCTTCAGGTGAATGCATTGTCAGGGTCTTTGACTCCCGAGCTGGGGAACCTGAAGAGCCTGAAATCCATGGATTTGTCTAACAACATGCTCTCCGGTGAGATTCCGGCGAGATTCGGCGAGCTGAAGAATATTACTCTTCTGAATCTGTTCAGGAACAAGCTTCACGGAGCTATACCAGAGTTTATAGGGGAGCTTCCAGCGTTGGAAGTTGTGCAACTGTGGGAGAATAACTTCACAGGTAGCATTCCAGAGGGTTTGGGCAAAAACGGGAGACTCAACCTTGTTGATCTTTCTTCTAACAAGTTAACTGGGACTTTGCCTACTTATCTCTGTTCTGGGAATACTCTTCAGACTCTGATAACTCTTGGGAATTTTCTTTTTGGTCCAATTCCTGAGTCGCTTGGTAGTTGTGAATCCCTTACACGGATTAGAATGGGAGAGAACTTTTTGAATGGTTCCATTCCGAGAGGGCTTTTTGGACTTCCCAAACTAACACAGGTTGAGCTTCAGGATAATTATCTCTCTGGAGAGTTTCCTGAGGTGGGTTCTGTTGCTGTTAATCTTGGTCAGATTACTCTCTCTAACAACCAGCTTTCTGGGGTTCTACCTCCCTCCATTGGTAACTTCTCCAGCGTGCAGAAGCTCCTTCTTGATGGCAACATGTTCACGGGTCGGATACCTCCCCAGATTGGGAGGTTGCAACAGCTTTCTAAGATTGATTTTAGTGGCAACAAGTTCTCGGGTCCTATTGTGCCTGAGATCAGTCAGTGTAAGCTGTTAACTTTCCTTGACCTTAGCCGCAATGAGCTATCTGGAGACATCCCAAATGAGATAACTGGCATGAGGATATTGAATTACTTGAATCTTTCTAGGAATCATTTAGTGGGTGGCATTCCCTCTTCGATATCATCTATGCAAAGCTTGACTTCTGTTGATTTTTCATACAACAACCTGTCTGGTTTGGTGCCTGGTACCGGTCAATTCAGCTACTTCAATTACACGTCTTTCTTGGGAAACCCTGACCTCTGTGGCCCCTATTTGGGTGCTTGCAAGGATGGGGTTGCCAATGGCGCACACCAACCTCATGTTAAAGGTCTCTCCTCTTCTTTTAAGCTGCTACTTGTTGTTGGGTTGCTACTATGTTCCATTGCTTTTGCTGTGGCTGCAATATTCAAGGCCCGGTCACTGAAGAAGGCCAGTGGGGCTCGTGCATGGAAGTTGACTGCGTTCCAACGTTTGGACTTCACTGTCGATGATGTTTTGCATTGCTTGAAGGAGGATAATATTATAGGGAAAGGAGGTGCTGGCATTGTCTACAAAGGGGCTATGCCTAATGGGGATCATGTTGCTGTGAAAAGGCTTCCGGCTATGAGTAGAGGCTCTTCACATGATCATGGCTTCAATGCTGAGATTCAAACATTGGGGCGAATCCGACACAGGCACATTGTTAGGTTGTTGGGCTTCTGTTCAAATCATGAGACAAACCTTTTGGTCTATGAGTACATGCCCAATGGAAGTTTAGGCGAGGTTCTTCATGGAAAGAAAGGGGGTCATTTGCATTGGGATACAAGGTATAAAATTGCGGTGGAGGCTGCCAAGGGGCTTTGCTATCTGCACCATGATTGTTCGCCACTCATTGTCCATCGTGATGTGAAGTCAAACAACATCCTTCTTGATTCTAATCATGAAGCCCATGTTGCTGATTTTGGGCTTGCTAAGTTCCTGCAAGATTCTGGGACATCTGAATGCATGTCTGCTATTGCTGGTTCATATGGATACATAGCTCCAGAGTATGCCTACACATTGAAAGTTGATGAGAAAAGCGATGTGTACAGTTTTGGTGTGGTTCTCTTAGAACTTATAACAGGCAGGAAACCAGTTGGAGAATTTGGTGATGGCGTGGACATAGTGCAATGGGTGAGGAAAATGACGGATTCTAACAAGGAAGGAGTTCTTAAAGTTCTTGATCCTAGACTTCCCTCAGttccccttcacgaagtgatgcatgttttctatgtagccatgctgtgcgttgaagaacaggctgtagagagaccaactatgcgtgaagttgttcaaatactGACAGAGCTTCCAAAGCCACCTGACTCTAAAGAGGGGAACTTAACAATAACGGAATCATCTTTGTCATCATCAAACGCTTTAGAATCTCCATCCTCAGCCTCTAAGGAAGATCAAAATCCTCCTCAATCCCCACCACCCGATCTTCTTAGCATTTAA 3039 0.4761 MRVLFLFLFFQFLHFHFPKTLSAPISEYRALLSLRSAITDATPPLLTSWNSSTPYCSWLGVTCDNRRHVTSLDLTGLDLSGPLSADVAHLPFLSNLSLASNKFSGPIPPSLSALSGLRFLNLSNNVFNETFPSELSRLQNLEVLDLYNNNMTGVLPLAVAQMQNLRHLHLGGNFFSGQIPPEYGRWQRLQYLAVSGNELEGTIPPEIGNLSSLRELYIGYYNTYTGGIPPEIGNLSELVRLDAAYCGLSGEIPAALGKLQKLDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNMLSGEIPARFGELKNITLLNLFRNKLHGAIPEFIGELPALEVVQLWENNFTGSIPEGLGKNGRLNLVDLSSNKLTGTLPTYLCSGNTLQTLITLGNFLFGPIPESLGSCESLTRIRMGENFLNGSIPRGLFGLPKLTQVELQDNYLSGEFPEVGSVAVNLGQITLSNNQLSGVLPPSIGNFSSVQKLLLDGNMFTGRIPPQIGRLQQLSKIDFSGNKFSGPIVPEISQCKLLTFLDLSRNELSGDIPNEITGMRILNYLNLSRNHLVGGIPSSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVANGAHQPHVKGLSSSFKLLLVVGLLLCSIAFAVAAIFKARSLKKASGARAWKLTAFQRLDFTVDDVLHCLKEDNIIGKGGAGIVYKGAMPNGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNHEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPDSKEGNLTITESSLSSSNALESPSSASKEDQNPPQSPPPDLLSI 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02009 1012 Gene3D Transferase(Phosphotransferase) domain 1 768 980 - -
Gma01g02009 1012 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 1002 - -
Gma01g02009 1012 Pfam Leucine Rich repeats (2 copies) 139 179 IPR025875 -
Gma01g02009 1012 SUPERFAMILY RNI-like 71 393 - -
Gma01g02009 1012 SMART LRR_typ_2 331 355 IPR003591 -
Gma01g02009 1012 SMART LRR_typ_2 283 307 IPR003591 -
Gma01g02009 1012 SMART LRR_typ_2 138 161 IPR003591 -
Gma01g02009 1012 SMART LRR_typ_2 114 137 IPR003591 -
Gma01g02009 1012 SMART LRR_typ_2 162 186 IPR003591 -
Gma01g02009 1012 SMART LRR_typ_2 571 594 IPR003591 -
Gma01g02009 1012 ProSiteProfiles Protein kinase domain profile. 690 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02009 1012 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 1002 - -
Gma01g02009 1012 Pfam Protein tyrosine and serine/threonine kinase 692 961 IPR001245 GO:0004672|GO:0006468
Gma01g02009 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Gma01g02009 1012 MobiDBLite consensus disorder prediction 973 999 - -
Gma01g02009 1012 Gene3D Ribonuclease Inhibitor 347 620 IPR032675 -
Gma01g02009 1012 SUPERFAMILY L domain-like 297 616 - -
Gma01g02009 1012 MobiDBLite consensus disorder prediction 965 1012 - -
Gma01g02009 1012 Gene3D Phosphorylase Kinase; domain 1 659 767 - -
Gma01g02009 1012 SMART serkin_6 690 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02009 1012 Gene3D Ribonuclease Inhibitor 181 346 IPR032675 -
Gma01g02009 1012 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Gma01g02009 1012 Gene3D Ribonuclease Inhibitor 25 180 IPR032675 -
Gma01g02009 1012 SUPERFAMILY Protein kinase-like (PK-like) 686 961 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02009 Gma-Chr1 55491364 55495123 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02009 14 991 Receptor kinase-like Gene Family AT5G65700 80.547 0.0 1587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma01g02009 PK_Tyr_Ser-Thr 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02009 - - gmx:547593 1978.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02009 01 55491364 55495123 Gma11g00400 11 3290511 3294043 GST
Gma01g02009 01 55491364 55495123 Gma17g01433 17 13543330 13547195 PCT
Gma01g02009 01 55491364 55495123 Gma05g01116 05 31698701 31702559 PCT
Gma17g01433 17 13543330 13547195 Gma01g02009 01 55491364 55495123 PCT
Gma05g01116 05 31698701 31702559 Gma01g02009 01 55491364 55495123 PCT