Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02007 ATGCCGCAACCATTGTTTCTGTTTTTACTTTTATGTTTATTGTGCTCAAGTAGTGGTTTATCTCAAGTTTTGTCCCTCGAGAGAGAGACTCAGATTCTACTTGGGGTCAAGAACACTCAGCTCGAAGACAAAAACAAGAGTCTCAAAAACTGGGTGCCCAACACAGACCACCACCCCTGCAACTGGACCGGCATTACCTGCGACGCACGAAACCACTCACTTGTCTCCATTGACCTCTCCGAAACTGGAATCTACGGCGACTTCCCCTTCGGTTTTTGTCGCATTCACACCCTCCAAAGCCTCTCTGTGGCTTCCAATTTTCTCACCAACTCCATCTCCCCCAACTCTCTGCTTCTCTGTTCCCACCTCCGTCTCTTGAACCTCTCCGACAATTACTTCGTCGGAGTCCTGCCGGAATTCCCGCCGGACTTCACCGAACTAAGAGAGCTAGACCTCTCAAAGAACAACTTCACCGGCGACATTCCGGCGAGTTTTGGACAGTTTCCACATCTGAGAACGCTCGTTTTATCCGGAAACCTCCTCAGCGGAACGATCCCTCCCTTCCTAGGAAACCTCAGTGAGTTAACTCGTTTGGAATTAGCTTACAACCCCTTCAAACCAGGACCTTTACCTTCCCAACTAGGAAACCTCTCTAATCTCGAAACACTGTTCCTCGCCGATGTAAACCTCGTAGGGGAAATTCCACACGCCATCGGTAACCTCACCTCGCTCAAGAACTTTGATTTGTCTCAGAACTCCTTGTCAGGTACAATCCCAAACAGCATTTCAGGTCTGAGAAACGTTGAACAAATTGAACTATTTGAAAACCAGCTTTTCGGCGAATTACCCCAAGGTTTAGGAAACCTCAGCAGTTTAATTTGCTTAGACCTCTCTCAGAACGCTCTAACGGGAAAACTACCAGACACAATTGCTTCTTTGCATCTCCAATCTCTCAACCTGAACGACAACTTTCTCAGGGGAGAAATTCCCGAAAGTCTAGCTTCAAACCCGAATCTGAAGCAACTGAAACTCTTCAACAACAGCTTCACCGGGAAACTCCCACGAGATCTGGGGCGAAACTCTGACATAGAAGATTTCGATGTCTCAACCAATGACTTGGTGGGAGAGTTGCCAAAGTACCTCTGCCAGGGGAACAAACTGGAGCATCTCATCACGTTCGCGAATCGCTTCTCTGGAACGCTCCCTGACCAATACGGCGAGTGTCGTTCACTTCAATATGTTAGAATCCAGAGCAACCAGTTCTCGGGCCCGGTGCCGCCATCGTTTTGGGCCCTTGCTGGGCTTCAGTTTCTGGAAATGTCCAACAACAGGTTCCAAGGTTCTGTCTCTGCTTCCATCTCTAGGGGACTCACCAAACTCATTTTGTCCGGTAACAGCTTTTCTGGCCAATTCCCAATGGAAATATGTGAACTTCATAATCTCATGGAGATTGACTTCAGCAAGAACCGCTTCACCGGTGAAGTTCCCACGTGCGTAACTAAGTTGACAAAATTACAGAAACTTAGACTGCAAGAGAACATGTTCACCGGCGAAATTCCCAGTAACGTGACCCACTGGACTGACATGACAGAGTTGGATTTGTCGTTTAACCGGTTCACCGGTTCAATCCCATCAGAACTTGGAAATTTACCGGATTTGACATACCTTGATCTCGCCGTTAATTCTTTAACGGGGGAGATTCCGGTGGAGTTGACGAACCTAAGACTCAACCAGTTCAACGTCTCTGGTAACAAGTTGCACGGAGTGGTTCCTTTAGGTTTCAACCGCCAGGTGTACTTAACGGGTCTAATGGGAAACCCTGGTCTCTGTAGCCCCGTTATGAAAACCCTGCCTCCTTGTTCCAAACGCAGGCCGTTTTCTCTGCTTGCTATTGTCGTTTTAGTTTGCTGCGTTTCGCTCCTTGTGGGGTCGACGTTGTGGTTCCTGAAGAGCAAGACGCGGGGTTGTAGTGGCAAATCCAAGAGCTCCTATATGTCAACCGCGTTTCAGAGAGTGGGGTTCAATGAAGAAGACATAGTTCCGAACTTAATCAGTAACAACGTGATTGCCACAGGGAGTTCGGGTCGGGTTTACAAGGTGAGGCTCAAGACGGGGCAGACGGTGGCGGTGAAGAAACTGTTTGGTGGCGCGCAAAAGCCTGACGTGGAAATGGTGTTCAGGGCGGAGATTGAGACTCTGGGAAGGATTCGGCATGCGAATATTGTGAAACTGTTGTTTAGTTGCAGTGGTGATGAGTTTAGGATATTGGTGTATGAGTACATGGAGAATGGGAGCTTAGGGGATGTGTTGCATGGTGAGGACAAGTGTGGGGAGTTAATGGATTGGCCTAGGAGGTTCGCAATTGCTGTGGGTGCGGCTCAGGGGTTGGCTTATTTGCACCATGATTCTGTGCCTGCTATTGTTCACAGGGACGTCAAGAGTAATAACATTTTGTTGGACCATGAGTTTGTGCCAAGAGTAGCAGATTTTGGTCTTGCTAAGACATTGCAACGTGAGGCCACCCAGGGTGCTATGTCCAGGGTTGCTGGATCATATGGTTACATTGCTCCTGagtatgcttatacaatgaaagtgactgagaagagcgatgtgtatagttttggggtggtgCTGATGGAATTGATCACAGGCAAGAGGCCTAATGATTCTTCATTTGGTGAGAACAAGGATATAGTGAAGTGGATCACTGAGACTGTTTTATCACCATCTCCTGAAAGAGGAAGTGGCGATATTGGAGGAGGAAAAGATTATATTATGAGCCAGATTGTGGACCCGAGATTGAACCCAGCCACTTGTGATTATGAAGAGATAGAGAAGGTCTTAAATGTGGCCCTACTCTGCACCTCAGCGTTTCCCATTAATAGACCCTCAATGAGAAGGGTGGTTGAATTGCTCAAGGACCATAAACTGTCATGA 2937 0.4685 MPQPLFLFLLLCLLCSSSGLSQVLSLERETQILLGVKNTQLEDKNKSLKNWVPNTDHHPCNWTGITCDARNHSLVSIDLSETGIYGDFPFGFCRIHTLQSLSVASNFLTNSISPNSLLLCSHLRLLNLSDNYFVGVLPEFPPDFTELRELDLSKNNFTGDIPASFGQFPHLRTLVLSGNLLSGTIPPFLGNLSELTRLELAYNPFKPGPLPSQLGNLSNLETLFLADVNLVGEIPHAIGNLTSLKNFDLSQNSLSGTIPNSISGLRNVEQIELFENQLFGELPQGLGNLSSLICLDLSQNALTGKLPDTIASLHLQSLNLNDNFLRGEIPESLASNPNLKQLKLFNNSFTGKLPRDLGRNSDIEDFDVSTNDLVGELPKYLCQGNKLEHLITFANRFSGTLPDQYGECRSLQYVRIQSNQFSGPVPPSFWALAGLQFLEMSNNRFQGSVSASISRGLTKLILSGNSFSGQFPMEICELHNLMEIDFSKNRFTGEVPTCVTKLTKLQKLRLQENMFTGEIPSNVTHWTDMTELDLSFNRFTGSIPSELGNLPDLTYLDLAVNSLTGEIPVELTNLRLNQFNVSGNKLHGVVPLGFNRQVYLTGLMGNPGLCSPVMKTLPPCSKRRPFSLLAIVVLVCCVSLLVGSTLWFLKSKTRGCSGKSKSSYMSTAFQRVGFNEEDIVPNLISNNVIATGSSGRVYKVRLKTGQTVAVKKLFGGAQKPDVEMVFRAEIETLGRIRHANIVKLLFSCSGDEFRILVYEYMENGSLGDVLHGEDKCGELMDWPRRFAIAVGAAQGLAYLHHDSVPAIVHRDVKSNNILLDHEFVPRVADFGLAKTLQREATQGAMSRVAGSYGYIAPEYAYTMKVTEKSDVYSFGVVLMELITGKRPNDSSFGENKDIVKWITETVLSPSPERGSGDIGGGKDYIMSQIVDPRLNPATCDYEEIEKVLNVALLCTSAFPINRPSMRRVVELLKDHKLS 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02007 978 Pfam Leucine rich repeat 218 278 IPR001611 GO:0005515
Gma01g02007 978 Pfam Leucine rich repeat 146 204 IPR001611 GO:0005515
Gma01g02007 978 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 976 - -
Gma01g02007 978 SMART serkin_6 683 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02007 978 SUPERFAMILY RNI-like 353 610 - -
Gma01g02007 978 Gene3D Phosphorylase Kinase; domain 1 659 760 - -
Gma01g02007 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Gma01g02007 978 Gene3D Ribonuclease Inhibitor 294 623 IPR032675 -
Gma01g02007 978 Pfam Protein kinase domain 688 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02007 978 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2 6 976 - -
Gma01g02007 978 Gene3D Transferase(Phosphotransferase) domain 1 761 978 - -
Gma01g02007 978 SUPERFAMILY Protein kinase-like (PK-like) 676 972 IPR011009 -
Gma01g02007 978 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Gma01g02007 978 SMART LRR_typ_2 432 456 IPR003591 -
Gma01g02007 978 SMART LRR_typ_2 168 192 IPR003591 -
Gma01g02007 978 SMART LRR_typ_2 241 265 IPR003591 -
Gma01g02007 978 SMART LRR_typ_2 289 313 IPR003591 -
Gma01g02007 978 SMART LRR_typ_2 550 574 IPR003591 -
Gma01g02007 978 SMART LRR_typ_2 502 526 IPR003591 -
Gma01g02007 978 SMART LRR_typ_2 144 167 IPR003591 -
Gma01g02007 978 ProSiteProfiles Protein kinase domain profile. 683 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02007 978 Gene3D Ribonuclease Inhibitor 24 207 IPR032675 -
Gma01g02007 978 Pfam Leucine Rich Repeat 314 334 IPR001611 GO:0005515
Gma01g02007 978 SUPERFAMILY L domain-like 70 592 - -
Gma01g02007 978 Gene3D Ribonuclease Inhibitor 208 293 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02007 Gma-Chr1 55470242 55473642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02007 29 976 Receptor kinase-like Gene Family AT5G65710 56.450 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma01g02007 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02007 - - gmx:100813889 1905.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02007 01 55470242 55473642 Gma11g00402 11 3313605 3316973 GST