Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01998 ATGGGTCTTGACCAGGATGCCAATAGCTCAGGCCTTCACCTCGTTCTAGGGCTTTCTTTGACTGCTACTGTAAAGGAAACCACTCAATCCACCAAGCCTGATGATGATCATCATCTTTGTGTTATTAAGCCAACGCCAACGAAACCTTATCCCCCCAATGAACCGTCTCTAACGTTGGGCCTGTCCGGTGAGAGTTACCACGTGACCAAGCAAGTGCTTAGAAATAACGTTTATTGTGAGGACCCTCTTGAGTTGTCTCGACAGACATCACCTCACAGCGTTGTTTCGTCTTTCTCAACTGGGAGGGTCGTTAAGAGGGAGAGAGATCTTAGCTGTGAAGACATAGAGGTAGAGGCAGAAGAGAGGGTTTCTTCAAGAGTCAGCGACGAAGACGAAGATGGAACCAATGCTAGAAAGAAGCTCAGACTCACCAAAGAACAATCTGCACTGCTAGAAGAGAGCTTCAAACAACACAGCACTCTCAACCCCAAACAGAAACAAGCTTTAGCCAGACGGTTAAATCTCCGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAAACATTGAAGGACGAAAACAGGAGGTTAAAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTAGCTCAACCCTTGTACATGCCTATGCCTGCTGCCACACTCACCATGTGCCCTTCTTGCGACAGGCTCGGTGGCGTTAACGATAACGGTTCGAATAAAAGCCCCTTCTCCATGGCTCCCAAGCCTCACTTCTATAACCCCTTCGCCAATCCTTCAGCAGCATGTTGA 852 0.4824 MGLDQDANSSGLHLVLGLSLTATVKETTQSTKPDDDHHLCVIKPTPTKPYPPNEPSLTLGLSGESYHVTKQVLRNNVYCEDPLELSRQTSPHSVVSSFSTGRVVKRERDLSCEDIEVEAEERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLKDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCDRLGGVNDNGSNKSPFSMAPKPHFYNPFANPSAAC 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01998 283 PANTHER - 7 283 - -
Gma01g01998 283 SMART HOX_1 136 198 IPR001356 GO:0003677
Gma01g01998 283 Coils Coil 193 230 - -
Gma01g01998 283 Pfam Homeobox associated leucine zipper 194 228 IPR003106 GO:0006355|GO:0043565
Gma01g01998 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 7 283 - -
Gma01g01998 283 CDD homeodomain 138 195 IPR001356 GO:0003677
Gma01g01998 283 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Gma01g01998 283 SUPERFAMILY Homeodomain-like 129 195 IPR009057 -
Gma01g01998 283 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Gma01g01998 283 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Gma01g01998 283 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Gma01g01998 283 Gene3D - 142 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01998 Gma-Chr1 55406161 55408007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01998 1 283 Homeobox Transcription Factor Family AT4G37790 59.667 5.83e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma01g01998 Homeodomain 3.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01998 K09338 - gmx:100784129 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01998 01 55406161 55408007 Gma11g00411 11 3372807 3374603 GST
Gma01g01998 01 55406161 55408007 Gma17g01444 17 13709210 13711060 PCT
Gma01g01998 01 55406161 55408007 Gma05g01109 05 31521554 31523228 PCT
Gma17g01444 17 13709210 13711060 Gma01g01998 01 55406161 55408007 PCT
Gma05g01109 05 31521554 31523228 Gma01g01998 01 55406161 55408007 PCT