Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01992 ATGGGAAGAGCTCCTTGCTGTGACAAAGCCAACGTGAAGAAAGGTCCATGGTCACCTGAAGAAGATGCCAAACTCAAGTCTTATATTGAGCAGCATGGCACTGGTGGCAACTGGATTGCCTTGCCCCAGAAAATAGGCCTTAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTGAATTATCTTCGCCCAAACATCAAACATGGGGGTTTCTCAGAAGAAGAAGACAACATCATCTGCAGCCTCTATGTCAGTATTGGAAGCAGGTGGTCAATTATAGCAGCACAGTTACCAGGGCGCACAGACAATGATATAAAGAACTATTGGAACACTAAGCTGAAGAAGAAGCTCCTTGGAAAACAAAGAAAGGAACAACAAGCTCAAGCTCAAGCGCGCCGAGTCAGCAATAATCAGCAGAAGCAAGATTTGAAAAGAGAAACGGAGAATTTGGTAGTGGCTTCTGAAGTCATCAATCAAGTTCCCTATTGGTCTTCATCAGAGTTTTCTTCTGTGCCTATGCCAGTGGTCAATGCTTCCTTCCAACACTATGGCCTGAACAATCAAACATCTCTTGGGAGCATGATTGTTAACAAACTAGAGGGAATTACATTTTCCAACGATCATCATCAGCAGCAGCAGCAACCATACGCCAATGCATGTGAAATTCCCTCCCTACAAGACCAGGTTTTTCCAACCATGGTAAATCAAGTAACCGTGGTGAGCAATGAAAACAATAGCGGTACTTATCAGCCATCGAATATATTTCAAGGGTTTGAAAACTTCCCAAGTGATTTTTGTGAACCGGTCTGTGTCAACCCCCAACAAATGGAG 831 0.4392 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKEQQAQAQARRVSNNQQKQDLKRETENLVVASEVINQVPYWSSSEFSSVPMPVVNASFQHYGLNNQTSLGSMIVNKLEGITFSNDHHQQQQQPYANACEIPSLQDQVFPTMVNQVTVVSNENNSGTYQPSNIFQGFENFPSDFCEPVCVNPQQME 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01992 277 Gene3D - 7 68 - -
Gma01g01992 277 PANTHER OS09G0431300 PROTEIN 1 221 - -
Gma01g01992 277 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gma01g01992 277 Coils Coil 126 146 - -
Gma01g01992 277 SMART sant 13 64 IPR001005 -
Gma01g01992 277 SMART sant 67 115 IPR001005 -
Gma01g01992 277 CDD SANT 71 111 IPR001005 -
Gma01g01992 277 CDD SANT 16 62 IPR001005 -
Gma01g01992 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma01g01992 277 PANTHER OS09G0431300 PROTEIN 1 221 - -
Gma01g01992 277 MobiDBLite consensus disorder prediction 123 137 - -
Gma01g01992 277 Gene3D - 70 148 - -
Gma01g01992 277 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma01g01992 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gma01g01992 277 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gma01g01992 277 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gma01g01992 277 MobiDBLite consensus disorder prediction 120 143 - -
Gma01g01992 277 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01992 Gma-Chr1 55373493 55374670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01992 1 126 MYB Transcription Factor Family AT3G49690 92.857 3.26e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma01g01992 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01992 K09422 - gmx:100812816 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01992 01 55373493 55374670 Gma11g00414 11 3405220 3407155 GST
Gma01g01992 01 55373493 55374670 Gma17g01448 17 13761490 13763224 PCT
Gma01g01992 01 55373493 55374670 Gma05g01104 05 31408260 31409794 PCT
Gma17g01448 17 13761490 13763224 Gma01g01992 01 55373493 55374670 PCT
Gma05g01104 05 31408260 31409794 Gma01g01992 01 55373493 55374670 PCT