Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01989 ATGAAGCCTATAGAAAATGGCAATACCGTTAGCATCAACTATCAAAATAGCTGGTTAGGCTTCTCCCTCTCCCCACAAATGAATATAGGTGTTCCTTcacaccttcatcagacacagccttcatcagCAGCTGTTGAAGCAGTTCCACCAAACTTTTACCATCATACACCTCTCCATAATTATGGCCTTTACTATGAACTGGAAGGTGAACACGTTGGAATGAGTTCATCCTTGCCTATCATGCCCCTTAAGTCCAATGCTTCTCTCTCTGGAATAGAAGCTCTGAGTAGATCACAAGCACAAGCAACGACAACTATTTCAGCAATGCATTCAAGCTTAAATAGTATGCTTATCAACGAACTCTTATGTCATGGACTAAACAATCCAAATAACTTAAATCACGTTCAAGAGGATATCAGCCAGCAACAATTCTCGTATTACTCTACCTTAAGGAACCAAGATGTGATTTTAGAAGGTTCCAAACACCAGCTCCCATGTATAGCTGAGGATGAAAATCCAGGTTTGAAGAGTTGGTTCTCAAGGGATTTTCATGCTAGACATGCAGAAGAATCAAGGATGATTGTTCCTTTGGAGTGTAATGGAGGCGAATCTGGATCCATTGGATCAATAACATATGGGGATTTGCATTCATCGAATTTGTCTGTGAGTCCTACCTCAGGATCAAGCAGTGTTACAAGTTCACCTGCTCTCACTAATACTGTTGCCACTAATACTAAGAAAAGGTGGCTTGAAATGGTGGACCAGAATCAGAAGCAAATAGTTCATAGGAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAAGGGGGTTATGATATGGAAGAAAAAGCAGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCATTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGGGCCTCCATGTACAGAGGAGTAACAAGGTCTCAAAGGCTAGCATTTACACACAGGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGAAGGGTAGCCGGAAACAAAGATCTATATCTTGGAACCTTTAGTACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATTAAATTCAGAGGAGTTAATGCTGTCACTAACTTTGATATAACAAGATATGACGTGGAAAAAATTATGGAGAGCAATAACCTTCTTAGCAGTGAACAAGCTAAGCGGAAAAGAGAGATGGATGATGGAACTAGAAGCGAGGCTACCGTTAACCAAAAACCTTCTACATATGACCACACTCAAGAAACCATTCTAATGCAGAAAAGATGCAAAAACCAATCAGAATGGAAGATGGTTCAGTTTCCATGCCCCCAACAGCTTGATCAGAATCAAAGAATCGAGAGTTGTAGAACTCAGCCCTTCTCAACGGACTTAGATAACATGTTTCGTCACCAAGTTGAGGAACGGAGCAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCATGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCCAAATTATTGGCTAACGTGGATTCTTGGGATCTATCTTCCAATCTCAGGACTGCGCTTTCTATGCCTCAGATGCCAATTTTTGCTGCTTGGACAGATGCATAA 1857 0.412 MKPIENGNTVSINYQNSWLGFSLSPQMNIGVPSHLHQTQPSSAAVEAVPPNFYHHTPLHNYGLYYELEGEHVGMSSSLPIMPLKSNASLSGIEALSRSQAQATTTISAMHSSLNSMLINELLCHGLNNPNNLNHVQEDISQQQFSYYSTLRNQDVILEGSKHQLPCIAEDENPGLKSWFSRDFHARHAEESRMIVPLECNGGESGSIGSITYGDLHSSNLSVSPTSGSSSVTSSPALTNTVATNTKKRWLEMVDQNQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRSQRLAFTHRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMESNNLLSSEQAKRKREMDDGTRSEATVNQKPSTYDHTQETILMQKRCKNQSEWKMVQFPCPQQLDQNQRIESCRTQPFSTDLDNMFRHQVEERSNMGTHLSNPSSLVTSLSSSREESPDKTSMPMLFGMPSTVSKLLANVDSWDLSSNLRTALSMPQMPIFAAWTDA 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01989 618 ProSiteProfiles AP2/ERF domain profile. 275 338 IPR001471 GO:0003700|GO:0006355
Gma01g01989 618 SUPERFAMILY DNA-binding domain 274 340 IPR016177 GO:0003677
Gma01g01989 618 Coils Coil 339 359 - -
Gma01g01989 618 ProSiteProfiles AP2/ERF domain profile. 374 441 IPR001471 GO:0003700|GO:0006355
Gma01g01989 618 MobiDBLite consensus disorder prediction 545 573 - -
Gma01g01989 618 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 105 - -
Gma01g01989 618 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 151 616 - -
Gma01g01989 618 Gene3D AP2/ERF domain 274 340 IPR036955 GO:0003700|GO:0006355
Gma01g01989 618 Gene3D AP2/ERF domain 374 443 IPR036955 GO:0003700|GO:0006355
Gma01g01989 618 MobiDBLite consensus disorder prediction 459 474 - -
Gma01g01989 618 MobiDBLite consensus disorder prediction 546 570 - -
Gma01g01989 618 CDD AP2 274 338 IPR001471 GO:0003700|GO:0006355
Gma01g01989 618 MobiDBLite consensus disorder prediction 458 487 - -
Gma01g01989 618 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 151 616 - -
Gma01g01989 618 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 105 - -
Gma01g01989 618 SMART rav1_2 275 344 IPR001471 GO:0003700|GO:0006355
Gma01g01989 618 SMART rav1_2 374 447 IPR001471 GO:0003700|GO:0006355
Gma01g01989 618 PRINTS Ethylene responsive element binding protein signature 276 287 IPR001471 GO:0003700|GO:0006355
Gma01g01989 618 PRINTS Ethylene responsive element binding protein signature 423 443 IPR001471 GO:0003700|GO:0006355
Gma01g01989 618 Pfam AP2 domain 275 330 IPR001471 GO:0003700|GO:0006355
Gma01g01989 618 Pfam AP2 domain 390 433 IPR001471 GO:0003700|GO:0006355
Gma01g01989 618 SUPERFAMILY DNA-binding domain 389 442 IPR016177 GO:0003677
Gma01g01989 618 CDD AP2 373 443 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01989 Gma-Chr1 55309208 55312633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01989 48 618 AP2-EREBP Transcription Factor Family AT4G37750 43.811 5.26e-132 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gma01g01989 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01989 K09285 - gmx:100812275 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01989 01 55309208 55312633 Gma11g00417 11 3463220 3466913 GST
Gma01g01989 01 55309208 55312633 Gma17g01451 17 13820814 13824739 PCT
Gma01g01989 01 55309208 55312633 Gma05g01095 05 31224989 31229198 PCT
Gma17g01451 17 13820814 13824739 Gma01g01989 01 55309208 55312633 PCT
Gma05g01095 05 31224989 31229198 Gma01g01989 01 55309208 55312633 PCT