Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01988 ATGCTTTCTGCTATTTCTTTTCAGGGAAACCCATTCCCGGCGTTGGAATACGGTTTCACGCCTTGGGATGGGCTTCACTCTTTGGGCTTCAAGCCCACCAGCCCCGACCCCAACCACGTCACTTCGAGATCCGGTTCAGACGACCCAAACCGAACCCATGCCGAAGAAAAACTGGCCTCGGACGAGTCGAACCGCGTTGCATCCATCATGGAGGAGCGAAAACGGAGGCGAATGATATCGAACCGGGAATCTGCCCGAAGGTCACGCGTGCGTAAACAAAGACACCTAGAGAACTTACGGAATCAGGTGAACCTATTTAGGGTTGAAAACCGGGAACTGAACAATGGGTTGCAGTTTCTCCTTCACCACGGTAACCGCTTGCGAACCGAAAACGAGTGGCTCCGGTCCGAACGAGCCCTGCTCCGTCAAAAACTGGCCAACATAAATCAACTTTTGCTTTTCCAACAATTGCAAGCATTTTCCTCTGCATGGCCCTGCAATATTGTCATGGCGGAATAA 519 0.5164 MLSAISFQGNPFPALEYGFTPWDGLHSLGFKPTSPDPNHVTSRSGSDDPNRTHAEEKLASDESNRVASIMEERKRRRMISNRESARRSRVRKQRHLENLRNQVNLFRVENRELNNGLQFLLHHGNRLRTENEWLRSERALLRQKLANINQLLLFQQLQAFSSAWPCNIVMAE 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01988 172 Pfam bZIP transcription factor 73 131 IPR004827 GO:0003700|GO:0006355
Gma01g01988 172 PANTHER BZIP TRANSCRIPTION FACTOR 19 172 - -
Gma01g01988 172 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 76 91 IPR004827 GO:0003700|GO:0006355
Gma01g01988 172 CDD bZIP_plant_GBF1 74 123 IPR045314 GO:0003700|GO:0006355
Gma01g01988 172 Gene3D - 71 124 - -
Gma01g01988 172 SMART brlzneu 69 133 IPR004827 GO:0003700|GO:0006355
Gma01g01988 172 MobiDBLite consensus disorder prediction 46 86 - -
Gma01g01988 172 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 71 134 IPR004827 GO:0003700|GO:0006355
Gma01g01988 172 MobiDBLite consensus disorder prediction 30 91 - -
Gma01g01988 172 SUPERFAMILY Leucine zipper domain 73 122 IPR046347 GO:0003700|GO:0006355
Gma01g01988 172 PANTHER BZIP TRANSCRIPTION FACTOR 44 19 172 - -
Gma01g01988 172 Coils Coil 82 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01988 Gma-Chr1 55299320 55300059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01988 1 156 bZIP Transcription Factor Family AT3G49760 37.805 1.25e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gma01g01988 bZIP_1 6.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01988 - - gmx:102667230 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01988 01 55299320 55300059 Gma11g00418 11 3482861 3483610 GST
Gma01g01988 01 55299320 55300059 Gma17g01459 17 13897772 13898598 PCT
Gma01g01988 01 55299320 55300059 Gma05g01091 05 31154504 31155046 PCT
Gma17g01459 17 13897772 13898598 Gma01g01988 01 55299320 55300059 PCT
Gma05g01091 05 31154504 31155046 Gma01g01988 01 55299320 55300059 PCT