Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01975 ATGGGTGCTCCTAAGCAGAAATGGACCGCAGAGGAAGAAGCAGCATTGAAAGCTGGAGTAGTCAAACACGGGGCTGGAAAATGGCGCACCATACTTACAGACCCAGAGTTCAGTTCCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCGAGGCAGAAAGCAAAGCTAGCTCTTAAAAAGAACCTACTACCATCCACCAAAATTGACAATAACCACTTGGCCTTGAGTACTGTAGTTCAACGTGACAAAGAAGTTGCAAATCCCAAGCCTTTGGCAGTTTCTAGTGGGACATCTCCTAATTCAAAGGAAAAAATATCGAAGCTACAGAACTTCCAGTTGGATAATCTTATATTAGAGTCCATTATCAAGTTGAAGGAGCCAAGGGGTTCTGACCAGGCAGCAATTGCTGCATATATAGAGGATCAATACTGTTCTACGCCGACCCTCAGAAAGTTACTGTCAACAAAACTGAAGCACATGGTGGCTAGTGGAAAATTAATGAAGGTAAAGCATAAGTACAGGATTGCAACAAATTTAACAATATCTGAGAAAAGAAGATGCTCTTCCCTGTTACTCCTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCAGAGAAGACTGGTGTCAACATCCTTTCAAAATCCGAAATTGATGCAGAGCTATCGAAAATGAAGGGTGTGACACCTCAAGAGGCTGCGGCGGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCCGAGGCTGAGGCAGCAGCTAGGGAGGCAGATGCTGCAGAAGCCGAGGCAGAGGCTGCACGAGTGTTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAAGACACTTCGTATTTGA 897 0.4504 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLPSTKIDNNHLALSTVVQRDKEVANPKPLAVSSGTSPNSKEKISKLQNFQLDNLILESIIKLKEPRGSDQAAIAAYIEDQYCSTPTLRKLLSTKLKHMVASGKLMKVKHKYRIATNLTISEKRRCSSLLLLEGRPKDSPKAEKTGVNILSKSEIDAELSKMKGVTPQEAAAAAAKAVAEAEAAIAEAEAAAREADAAEAEAEAARVFAKAAMKALKCKTLRI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01975 298 PANTHER SINGLE MYB HISTONE 4 1 298 IPR044597 GO:0003691
Gma01g01975 298 PANTHER MYB TRANSCRIPTION FACTOR 1 298 - -
Gma01g01975 298 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Gma01g01975 298 CDD SANT_TRF 6 57 - -
Gma01g01975 298 SUPERFAMILY "Winged helix" DNA-binding domain 121 200 IPR036390 -
Gma01g01975 298 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma01g01975 298 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gma01g01975 298 SMART h15plus2 121 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma01g01975 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Gma01g01975 298 Pfam linker histone H1 and H5 family 128 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma01g01975 298 Coils Coil 246 280 - -
Gma01g01975 298 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Gma01g01975 298 Gene3D - 2 59 - -
Gma01g01975 298 SMART sant 4 59 IPR001005 -
Gma01g01975 298 Gene3D - 121 221 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01975 Gma-Chr1 55193175 55200400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01975 1 294 Single Myb Histone (SMH) Gene Family AT5G67580 55.405 1.33e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma01g01975 Linker_histone 2.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01975 K09422 - gmx:778165 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01975 01 55193175 55200400 Gma11g00433 11 3588156 3590739 GST
Gma01g01975 01 55193175 55200400 Gma17g01479 17 14163542 14173066 PCT
Gma01g01975 01 55193175 55200400 Gma05g01070 05 30560957 30564718 PCT
Gma17g01479 17 14163542 14173066 Gma01g01975 01 55193175 55200400 PCT
Gma05g01070 05 30560957 30564718 Gma01g01975 01 55193175 55200400 PCT