Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01971 ATGGATACCACGTTGTTTAGGGTAGTGAGTAGTTTCCAACACCAACACCAACCCGATCACGATCAATCCCTCAACAACTCCACCACAAGCAGCAGCTCTCGATCCTCCAGACAACAACAAAACTATCCCTACCCACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCGTCTTCTTCCAAGCACTATTGTCCCTATCAACCCCACCCTCCCTCCACTACCACCATCCACCACTCCTTCTCCCCCACTCCCTGCGACTTTGAATTCTCCGGCAAGTGGGCCCAGGACATCCTCCTCGAAACCGCACGGGCCGTGGCCGACAAGAACACCACGCGCCTCCAACAACTCATGTGGATGCTAAACGAGCTAAGCTCCCCCTACGGCGACACCGACCAGAAACTGGCCTCGTACTTCCTCCAAGCCTTCTTCAGCCGCATCTCCCAAGCCGGGGACCGAACCTACCGAACCTTAGCTTCGGCCTCGGAGAAAACATGCTCCTTCGAATCGACCCGCAAGACGGTGCTCAAGTTCCAGGAGGTGAGTCCCTGGACAACCTTCGGCCACGTGGCGTCCAATGGCGCCATCTTGGAAGCCTTGGAAGGCGAGCCCAAACTACACATAATTGACATCAGCAACACCTATTGCACCCAATGGCCAACCCTCTTCGAAGCCTTGGCCACTCGAAATGACGACACTCCGCACCTCCGTTTAACCTCCGTCGTCACCGCTGACGCCACCGCGCAGAAACTCATGAAGGAAATCGGCGCCAGAATGGAGAAATTCGCCAGACTCATGGGCGTGCCCTTTAAATTCAACGTCGTTCATCACGTAGGTCAACTCTCTGACTTGGATTTCAGCATGTTGGACATTAAAGAAGACGAGGCCTTGGCGATTAACTGCGTCAACACCTTGCATTCGATCGCCGCCGTTGGGAACCACCGTGACGCGGTGATATCTTCCTTGAGGAGGTTGAAACCGAGGATCGTCACACTGGTGGAGGAGGAGGCTGATTTGGACGTGGGATTGGAGGGGTTTGAGTTTGTGAAAGGGTTCGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCGTTGGACGAGAGTTTTCCGCGGACGAGCAACGAGAGGTTGTTGCTGGAGAGGGCGGCGGGGAGGGCGGTGGTGGACCTAGTGGCGTGTTCGGCGGCGGAGTCGGTGGAGCGGAGAGAGACGGCGGCGCGGTGGGCGAGGAGGATGCATGGAGGGGGGTTAAATACGGTGGCGTTTAGCGAAGAGGTTTGCGATGATGTGAGGGCGTTGCTGAGGAGGTATAGGGAGGGGTGGGCAATGACACAGTGCTCCGACGCCGGAATATTCCTGACGTGGAAGGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAG 1431 0.5584 MDTTLFRVVSSFQHQHQPDHDQSLNNSTTSSSSRSSRQQQNYPYPQEDEECFNFFMDEEDLSSSSSKHYCPYQPHPPSTTTIHHSFSPTPCDFEFSGKWAQDILLETARAVADKNTTRLQQLMWMLNELSSPYGDTDQKLASYFLQAFFSRISQAGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDISNTYCTQWPTLFEALATRNDDTPHLRLTSVVTADATAQKLMKEIGARMEKFARLMGVPFKFNVVHHVGQLSDLDFSMLDIKEDEALAINCVNTLHSIAAVGNHRDAVISSLRRLKPRIVTLVEEEADLDVGLEGFEFVKGFEECLRWFRVYFEALDESFPRTSNERLLLERAAGRAVVDLVACSAAESVERRETAARWARRMHGGGLNTVAFSEEVCDDVRALLRRYREGWAMTQCSDAGIFLTWKEQPVVWASAWRALT 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01971 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 473 IPR005202 -
Gma01g01971 476 MobiDBLite consensus disorder prediction 9 43 - -
Gma01g01971 476 Pfam GRAS domain family 102 473 IPR005202 -
Gma01g01971 476 ProSiteProfiles GRAS family profile. 91 473 IPR005202 -
Gma01g01971 476 PANTHER PROTEIN SHORT-ROOT 1 473 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01971 Gma-Chr1 55170589 55172019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01971 41 473 GRAS Transcription Factor Family AT4G37650 63.804 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma01g01971 GRAS 4.9e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01971 - - gmx:100820459 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01971 01 55170589 55172019 Gma11g00437 11 3614064 3615512 GST
Gma01g01971 01 55170589 55172019 Gma17g01482 17 14199802 14201600 PCT
Gma01g01971 01 55170589 55172019 Gma05g01066 05 30441050 30442588 PCT
Gma17g01482 17 14199802 14201600 Gma01g01971 01 55170589 55172019 PCT
Gma05g01066 05 30441050 30442588 Gma01g01971 01 55170589 55172019 PCT