Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01970 ATGGGGAAGAAGCAGCACAGCAAAGACAGAATGTTCATCACCAAAACGGAGTGGGCAACGGAGTGGGGAGGCGCTAAATCCAAAGAAAATCGCACTCCCTTCAAACGTCTTCCCTTCTATTGCTGCTCGCTTACGTTTACGCCGTTTGAAGAACCGGTCTGCACACCTGATGGCAGTGTTTTCGATAATATGAATATAACTCCCTATATTGTAAAATATGGCAAACATCCAGTCAATGGAGCTCCTCTCAAGCATCAGGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGGAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACACATATTGTGGCAGTGAAGACCACAGGAAACGTGTTCTGCTATGAGGCTGTTAAAGAGTTAAACATTAAGACAAAAAACTGGAAGGAGCTCCTCACTGATGAGCCATTCACTAAGGATGACCTTATAACCATTCAAAATCCTAATGCACTTGACAGCAAGGTTCTTCTGGATTTTGATCATGTTAAAAATAGTTTGAAAGTTGATGATGAAGAACTACAGAAAATGAGTTCAGATCCAACCTATAATATAAACATGTCGGGTGATATAAAGCAAATGCTTAAGGAGCTTGGAACTGAGAAAGGGAAGGAAACTGCATTGCATGGGGGAGGCGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCTGCCATCTTAGCTGCAAGGTCACGTGTTGAAGAAGATTCCAAATCAAATCCAAATAAAGAGGCCAAAGCTCCTCAGGCATTTAGTGTTGTTGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCAGCAGGTGATAAAACTGCAGCTAGAATAGCTATGCATGTGGCTGGTGACAGGGTGCCAGTGAATGCAAAGATGGTAAAAAGCCGTTTCACGACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAGTATGTGAAAGTTGAGAAGAATCCAAAAAAGAAGGGATATGTACAACTGCATACAACACATGGTGATTTGAACATTGAGCTGCATTGTGATATAACCCCCAGGGCATGCGAGAACTTCATCACTCTTTGTGAACGTGGATATTATAATGGAGTTGCTTTTCATAGAAACATTAGGAATTTTATGATACAGGGCGGTGATCCTACTGGTACCGGTCGAGGAGGGGAATCTATATGGGGAAAGCCTTTTAAAGATGAACTCAACTCCAAATTAATTCACTCCGGAAGGGGTGTGGTAAGCATGGCAAACAGTGGCCCACACACTAATGGTTCCCAGTTTTTCATCTTGTACAAGTCTGCAAATCATCTAAACTTCAAACATACAGTTTTTGGAGGAGTTGTGGGTGGCTTGACTACCCTAGCGACAATGGAAAAGGTTCCTGTTGATGATGATGACCGGCCTCTGGAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAACCAGATGAGGGAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAATGATAAGGTAGGCTCATGGTATAGCAATCCTGGCGCTGCAACGTCTGTTTCTGGAGGTACAGGGGCTGGTGGTGGCGTTGGCAAGTACTTAAAAGCTAGGAACACTCAAGCTAAATCTGCTACTGTTGACAACACCGGTACAGACGTTGTAGTAAAGAAAAGAAAAGTGGGAGTTGCCAGCAGTGAATTTAAAGATTTTTCTGCATGGATTTGTACGATACAGCGTATTCATTGGATGAGAGAATAG 1830 0.4268 MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKRLPFYCCSLTFTPFEEPVCTPDGSVFDNMNITPYIVKYGKHPVNGAPLKHQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDSKVLLDFDHVKNSLKVDDEELQKMSSDPTYNINMSGDIKQMLKELGTEKGKETALHGGGGGKAQKERAAALAAILAARSRVEEDSKSNPNKEAKAPQAFSVVDAASASVHGRSAAAAKASAGDKTAARIAMHVAGDRVPVNAKMVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLATMEKVPVDDDDRPLEEIKITSVTIFVNPYTEPDEGEEQDNAKEKNAEDEDNDKVGSWYSNPGAATSVSGGTGAGGGVGKYLKARNTQAKSATVDNTGTDVVVKKRKVGVASSEFKDFSAWICTIQRIHWMRE 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01970 609 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Gma01g01970 609 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Gma01g01970 609 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 595 - -
Gma01g01970 609 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 595 IPR044666 -
Gma01g01970 609 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Gma01g01970 609 CDD cyclophilin_RING 350 508 - -
Gma01g01970 609 MobiDBLite consensus disorder prediction 505 548 - -
Gma01g01970 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Gma01g01970 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Gma01g01970 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Gma01g01970 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Gma01g01970 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Gma01g01970 609 Pfam U-box domain 39 90 IPR003613 GO:0004842|GO:0016567
Gma01g01970 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Gma01g01970 609 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Gma01g01970 609 SUPERFAMILY RING/U-box 37 104 - -
Gma01g01970 609 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 500 IPR002130 GO:0000413|GO:0003755
Gma01g01970 609 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Gma01g01970 609 MobiDBLite consensus disorder prediction 512 531 - -
Gma01g01970 609 Gene3D - 328 514 IPR029000 -
Gma01g01970 609 SUPERFAMILY Cyclophilin-like 350 508 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01970 Gma-Chr1 55161924 55166289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01970 1 597 U-box Gene Family AT5G67530 75.748 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01970 K10598 - gmx:100819923 1141.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01970 01 55161924 55166289 Gma11g00438 11 3620670 3625710 GST