Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01965 atggagagttatttaaatgaGAATTTTGAAGTGAAGTCCAAAAATTCCCCCGAAGAGGTTCTTCAACGATGGAGGAGACTATGCGGGATCGTCAAGAACCCCAGAAGACGCTTTCGTTTCACTGCAAATCTCTCCAAGAGGGGCGAAGCTGCTGCTATGCGTCGTACCATTCAGGAGAAGTTGAGGATTGCAATTTTGGTTTCCAAAGCAGCACTTCAATTTATCCAAAGCGTGCAACTAAGCGATTACAAACTGCCAGAGGAAGTTAAAGATGCAGGTTTTCAAATCTGCGGCGATGAATTAGGGTCTATTGTTGAAGTCCATGATGTAAAGAAGTTCAGACATCATGGTGGGGTTGATGGCATTGCAGAGAAGCTTTCTACATCAACCACTGAGGGTCTTAACAGTGATACTGAGTTACTGAATAGGAGACAGCAGATATATGGAATCAACAAATTTACTGAAAGTGCAGCTACAAGTTTCTGGGTTTTTGTTTGGGAAGCCTTTCAAGACATGACTCTGATGATACTTGGAGTGTGTGCTATCGTGTCTCTGCTAGTTGGCATTGCAACAGAAGGATGGCCAAAGGGTGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTGCTTGTAGTCTTTGTGACAGCAACAAGCGATTATCGCCAATCGTTACAGTTCAGGGATTTAGACAAGGAGAAGAAGAAAATTTCCATTCAGGTCACAAGAAATGGATACAGACAAAAAATGTCAATATATGAATTACTTCCTGGTGACATTGTGCACCTTGCCATTGGTGACCAAGTCCCTGCTGATGGACTATTTGTCTCAGGATTTTCTGTGTTGATAGATGAGTCAAGCTTAACAGGAGAGAGTGAGCCAGTGATGGTGAATTCTGAAAATCCATTTCTTCTTTCTGGGACCAAGGTCCAAGACGGATCATGCAAGATGTTGGTTACTAGTGTTGGCATGAGGACTCAATGGGGCAAGTTGATGGCTACTCTCAGTGAAGGTGGAGATGATGAAACCCCACTACAGGTGAAGTTGAATGGTGTTGCAACCATTATTGGTAAGATAGGCCTATTCTTTGCAGTGGTTACTTTTGCAGTTCTAGTGCAAGGACTCGTAAGCCTAAAACTCCAACAAGGGAGCTTACGGAGCTGGACCGGGGATGATGCATTGGAGCTGTTGGAGTTCTTTGCAGTTGCAGTTACCATAGTTGTTGTTGCTGTTCCAGAGGGGCTGCCATTGGCTGTGACACTGAGTCTTGCATTTGCAATGAAGAAAATGATGAATGACAAAGCCCTTGTGAGACATTTGGCAGCCTGTGAGACCATGGGATCAGCCACAACTATATGTAGTGACAAGACTGGGACACTAACAACCAACCACATGACTGTTGTGAAAACATGCTTTTGCATGAACAGCAAGGAAGTGAGCAACAACAATGCTTCTAGTTTGTGTTCTGAACTCCCAGAACCTGCTGTGAAACTGCTGCTAGAGTCAATATTCAATAATACAGGGGGAGAGGTTGTGGTTAACCAAAATGGAAAACGTGAGATTCTAGGGACTCCAACCGAGGCTGCAATATTGGAGTTTGGTTTGTCATTAGGTGGAGATTTTCAAGGAGAGAAACAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAATTCCACTAAGAAGAAAATGAGTGTGGTGGTTGAGCTCCCTGGTGGAGGCTTAAGAGCCCACTGCAAAGGTGCTTCTGAAATAATTCTGGCTGCTTGTGACAAAGTTCTCAACTCAAATGGTGAGGTTGTACCCCTTGATGAAGAATCAACTAGCCATCTTAAGGCTACAATAAATCAGTTTGCAAGTGAGGCACTTAGAACACTATGCCTTGCCTATGTGGAATTGGAAAATGGGTTCTCTCCTGAAGACCCTATTCCTGTTTCTGGATATACATGCATAGGAGTTATTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCTGTGGCAATGTGTCGTTCAGCTGGAATAACAGTTAGAATGGTTACTGGTGACAACATTAATACTGCAAAGGCTATAGCCAGGGAGTGTGGGATTTTAACTGATGATGGCATAGCCATTGAAGGTCCAGAATTTAGAGAGAAGAGTCAGGAAGAGTTGCTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACACACACTGGTGAAACACTTGCGTACCACTTTTGGGGAAGTGGTAGCTGTAACAGGTGATGGAACTAATGATGCCCCAGCACTTCATGAAGCTGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACGATAGTAACTGTGGCCAAATGGGGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGCTTACCGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTGACAGGAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGGACACACTGGGAGCACTTGCTCTTGCTACTGAACCTCCAAATGATGATTTAATGAAACGTTCACCTGTTGGAAGGAAGGGAAATTTCATCAGCAATGTCATGTGGAGGAACATCTTAGGACAATCATTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAGAGGAAAATCAATCTTTTTACTTGAGGGCCCCAATTCAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAGGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGCATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTTTCTTCCAAATCATAATAGTTGAGTACTTGGGAACCTTTGCAAACACAACACCTCTCACCCTGTCACAGTGGTTCTTTTGCTTATTGGTTGGATTTATGGGCATGCCTATTGCTGCTCGCTTAAAGAAGATTCCTGTTTGA 3045 0.4243 MESYLNENFEVKSKNSPEEVLQRWRRLCGIVKNPRRRFRFTANLSKRGEAAAMRRTIQEKLRIAILVSKAALQFIQSVQLSDYKLPEEVKDAGFQICGDELGSIVEVHDVKKFRHHGGVDGIAEKLSTSTTEGLNSDTELLNRRQQIYGINKFTESAATSFWVFVWEAFQDMTLMILGVCAIVSLLVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFRDLDKEKKKISIQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNSENPFLLSGTKVQDGSCKMLVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLVSLKLQQGSLRSWTGDDALELLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCFCMNSKEVSNNNASSLCSELPEPAVKLLLESIFNNTGGEVVVNQNGKREILGTPTEAAILEFGLSLGGDFQGEKQACKLVKVEPFNSTKKKMSVVVELPGGGLRAHCKGASEIILAACDKVLNSNGEVVPLDEESTSHLKATINQFASEALRTLCLAYVELENGFSPEDPIPVSGYTCIGVIGIKDPVRPGVKESVAMCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSQEELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSRGKSIFLLEGPNSDLVLNTLIFNSFVFCQVFNEINSREMEKINVFKGILDNYVFVGVISATVFFQIIIVEYLGTFANTTPLTLSQWFFCLLVGFMGMPIAARLKKIPV 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01965 1014 Gene3D - 449 798 IPR023214 -
Gma01g01965 1014 PANTHER CATION TRANSPORTING ATPASE 4 1013 - -
Gma01g01965 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Gma01g01965 1014 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Gma01g01965 1014 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 662 IPR023299 GO:0000166
Gma01g01965 1014 Gene3D - 16 76 - -
Gma01g01965 1014 PANTHER CALCIUM-TRANSPORTING ATPASE 1 4 1013 - -
Gma01g01965 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 115 1013 IPR023298 -
Gma01g01965 1014 Pfam Cation transporter/ATPase, N-terminus 115 184 IPR004014 -
Gma01g01965 1014 Gene3D - 462 657 IPR023299 GO:0000166
Gma01g01965 1014 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 106 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gma01g01965 1014 SMART Cation_ATPase_N_a_2 113 189 IPR004014 -
Gma01g01965 1014 SFLD p-type atpase 434 805 IPR044492 -
Gma01g01965 1014 SUPERFAMILY Calcium ATPase, transduction domain A 238 332 IPR008250 -
Gma01g01965 1014 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Gma01g01965 1014 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma01g01965 1014 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma01g01965 1014 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma01g01965 1014 SFLD Haloacid Dehalogenase 434 805 - -
Gma01g01965 1014 Pfam Cation transport ATPase (P-type) 513 591 - -
Gma01g01965 1014 Gene3D - 139 335 - -
Gma01g01965 1014 SUPERFAMILY HAD-like 450 858 IPR036412 -
Gma01g01965 1014 Pfam E1-E2 ATPase 236 430 - -
Gma01g01965 1014 Gene3D - 167 1003 - -
Gma01g01965 1014 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Gma01g01965 1014 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Gma01g01965 1014 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Gma01g01965 1014 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Gma01g01965 1014 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Gma01g01965 1014 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Gma01g01965 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 394 476 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma01g01965 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 724 839 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma01g01965 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 544 698 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma01g01965 1014 CDD P-type_ATPase_Ca_PMCA-like 141 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01965 Gma-Chr1 55130620 55135605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01965 1 1014 Primary Pumps ATPases AT4G37640 81.675 0.0 1718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01965 K01537 - gmx:547567 1967.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01965 01 55130620 55135605 Gma11g00443 11 3652913 3660119 GST
Gma01g01965 01 55130620 55135605 Gma17g01486 17 14239442 14244122 PCT
Gma01g01965 01 55130620 55135605 Gma05g01062 05 30333187 30337707 PCT
Gma17g01486 17 14239442 14244122 Gma01g01965 01 55130620 55135605 PCT
Gma05g01062 05 30333187 30337707 Gma01g01965 01 55130620 55135605 PCT