Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01961 ATGAAAGCTCTTCACTTGAGCTTCTACTTCTACATCATCGTCTTCACACTGTCCCTATTCCTCTCCTTTCAAGTCAACACTGTAAAAGGGGTCAACAACACCAGCGCCAATGAATCTGGCAATAGAAGAATTCTGCACCAGCCATTGTTCCCGGCGAGTTCCGCTCCACCGCCAGCAGGCACGGCGTCACCACCGCCACCACCGGCGGTGGAAACCCCTCCATCTCCGGACGGCGGCAACATCCCCTTCTTCCACGAGTACCCGGCGGATCAGAACCAACAAGCAGCACCGTCGTCCACGGTGAACTCCTCAATCGCAAACCCAACGGCAACACAGCCAACAAAGGGAACAAAGAAAGTAGCAATCGCGATCTCCGTTGGAATTGTGACGCTTGGGATGCTCTCAGCACTCGCCTTCTTCTTATACAAACACAGAGCAAAACATCCCGTGGAGACTCAAAAGTTCGTAGCTGCTGGGAGTGGGAACAACAATAACAACAACCCACCAAACAGGAACAGCAACAGCAACGAGGATGCAAACACAACTTCGGCACCATCGAGTTTCCTCTACATTGGAACCGTTGAACCCACGGTTTCACGAGATGCTAATAAGCCCAACCGATCGCCCTATCACAAGCTCAAGCGATCCGATCGCTACCGGCCCAGTCCCGAATTGCAGCCAATGCCGCCGCTCACTAAGCCTCCCGGCGGGAATTACCCGCCAGCTTTGTCTTCCTCGCCCGAGTCCGACGAGGAGAGCCGCGAGACGGCGTTTCACTCGCCGCAGAACTCGTCCATCGATGGCTACTACACGCCCGCTTCGCGGCATAGCTCTCTCGTCAACGGTAGTCCTGCGAAGAGAGAAACGAATTCCACTCCCGCACCCGTTGTTGTTCCGTTCTCCAAGAGAACTTCGCCCAATTCACGCGTTTCCGCACCCTCGCCGGAGATTAGACACGTCATCATACCGTCTATAAAGCAGCCTCCACCACCGTCGCCGCCGCCACCTAAGCATTCCCTAAAGCCAGAATTCTCGGCGCCTCCCCCACCTCCGAATTTGAAGCGTCTTCAGTCAACAACAACAACAACCGACACTGCTTTGCACGTGTCAAGGACTTCACTTAATcctcctccaccaccgccacctcctccgccgccgccacctccACCGCTGCAGCAAAAATCAGTGTCTCCGGCGGTTAGTGCTTCTTCTAATTCTGCATCTGTAAAGCGACAATCTTGGTCACCAGTTCAATGTAGTGTGACGAAAGGTTCAGATGGGGTTGAACAAAGTCAAAGTGTGAGCTCTTCCGAGAGGCATGAAGCCAATGACACGGATGGAGCCAAACCAAAATTGAAAGCTCTGCATTGGGATAAAGTGCGTGCGACCTCAGACCGTGCTACTGTGTGGGACCAGATCAAATCAAGCTCCTTTCAGTTAAATGAGGACATGATGGAATCGTTGTTTGGATGCAAAGCCACGAATTTTACCCCCAAAGAACCTCCCAGAAAAAAATCAGTTCTTCCTTCGGTTGATCAGGAGAACAGGGTGTTAGACCCGAAGAAGTCACAGAACATAGCTATTCTTCTCAGGGCTTTGAATGTGACCAGAGATGAGGTGTCTGAAGCTCTTTTAGATGGGAATCCTGAAGGTTTGGGCACTGAGCTATTGGAAACCCTAGTGAAGATGGCTCCTACTAAAGAGGAAGAGATAAAACTTAAAAACTATGACGGCGATCTCTCAAAACTTGGAGCTGCAGAAAGATTTCTTAAAGCAGTGCTTGATATCCCTTTTGCCTTTAAAAGAGTTGAAGCTATGCTATATAGAGCCAACTTTGACGCAGAAGTTAACTACCTTAGACAGTCTTTTCAAACCATGGAGGCTGCAAGCGAGGAAATAAAGAACAGCCGGTTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACAGAATGAATGTTGGCACTAATCGAGGGGATGCTAAAGCTTTCAAATTGGACACACTTCTAAAACTTGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTCCACTTTGTGGTCCAAGAAATCATTAGATCTGAAGGTGCTGGAGCTGAATCTGCAAATGATAATGTGAAGATGGATTCCAAATTTAATGAGGATGAGTTTAAGAAGCAAGGTTTGCGGGTTGTGGCAGGGCTCAGTAGAGATCTTAGTGATGTAAAAAAAGCAGCAGGAATGGATTCAGATGTCTTGAGCAGCTATCTTTCAAAGCTTGAAACAGGCCTTGATAAAGTGCGATTGGTTTTGCAATATGAAAAGCCAGATATGCAAGGCAATTTCTTTAACTCCACAAAGCTATTTCTGAAATATGCTGAAGATGAAATTGTAAGGATTAAAGCAGATGAGAGAAAAGCCTTGTACCTTGTAAAAGAAGTTACAGAGTACTTTCATGGGAATGCAACAAAGGAAGAAGCCCACCCTCTCAGAATTTTCATGATTGTAAGAGACTTTCTGAATATCTTGGATCTAGTGTGCAAAGAAGTGGAAAAGATGCACGATAGAATCGTTGGTGGTTCTGGCAGATCCTTCCGAATACCTCCAAATGCATCATTACCTGTTCTCAACAGATACAATCATCCAAAGCAGGATAGAAGCTCAGATGAGGAGAGCTCATCCCCCTAG 2673 0.4676 MKALHLSFYFYIIVFTLSLFLSFQVNTVKGVNNTSANESGNRRILHQPLFPASSAPPPAGTASPPPPPAVETPPSPDGGNIPFFHEYPADQNQQAAPSSTVNSSIANPTATQPTKGTKKVAIAISVGIVTLGMLSALAFFLYKHRAKHPVETQKFVAAGSGNNNNNNPPNRNSNSNEDANTTSAPSSFLYIGTVEPTVSRDANKPNRSPYHKLKRSDRYRPSPELQPMPPLTKPPGGNYPPALSSSPESDEESRETAFHSPQNSSIDGYYTPASRHSSLVNGSPAKRETNSTPAPVVVPFSKRTSPNSRVSAPSPEIRHVIIPSIKQPPPPSPPPPKHSLKPEFSAPPPPPNLKRLQSTTTTTDTALHVSRTSLNPPPPPPPPPPPPPPPLQQKSVSPAVSASSNSASVKRQSWSPVQCSVTKGSDGVEQSQSVSSSERHEANDTDGAKPKLKALHWDKVRATSDRATVWDQIKSSSFQLNEDMMESLFGCKATNFTPKEPPRKKSVLPSVDQENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPEGLGTELLETLVKMAPTKEEEIKLKNYDGDLSKLGAAERFLKAVLDIPFAFKRVEAMLYRANFDAEVNYLRQSFQTMEAASEEIKNSRLFLKLLEAVLRTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAGAESANDNVKMDSKFNEDEFKKQGLRVVAGLSRDLSDVKKAAGMDSDVLSSYLSKLETGLDKVRLVLQYEKPDMQGNFFNSTKLFLKYAEDEIVRIKADERKALYLVKEVTEYFHGNATKEEAHPLRIFMIVRDFLNILDLVCKEVEKMHDRIVGGSGRSFRIPPNASLPVLNRYNHPKQDRSSDEESSSP 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01961 890 Pfam Formin Homology 2 Domain 445 838 IPR015425 -
Gma01g01961 890 MobiDBLite consensus disorder prediction 355 372 - -
Gma01g01961 890 MobiDBLite consensus disorder prediction 205 221 - -
Gma01g01961 890 MobiDBLite consensus disorder prediction 324 354 - -
Gma01g01961 890 SUPERFAMILY Formin homology 2 domain (FH2 domain) 379 849 - -
Gma01g01961 890 MobiDBLite consensus disorder prediction 373 394 - -
Gma01g01961 890 MobiDBLite consensus disorder prediction 157 450 - -
Gma01g01961 890 MobiDBLite consensus disorder prediction 91 117 - -
Gma01g01961 890 MobiDBLite consensus disorder prediction 157 204 - -
Gma01g01961 890 MobiDBLite consensus disorder prediction 48 117 - -
Gma01g01961 890 MobiDBLite consensus disorder prediction 868 890 - -
Gma01g01961 890 Gene3D Formin, FH2 domain 438 850 IPR042201 -
Gma01g01961 890 SMART it6_source 442 853 IPR015425 -
Gma01g01961 890 MobiDBLite consensus disorder prediction 51 75 - -
Gma01g01961 890 ProSiteProfiles Formin homology-2 (FH2) domain profile. 442 864 IPR015425 -
Gma01g01961 890 PANTHER FORMIN-RELATED 2 890 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Gma01g01961 890 MobiDBLite consensus disorder prediction 223 241 - -
Gma01g01961 890 MobiDBLite consensus disorder prediction 395 438 - -
Gma01g01961 890 MobiDBLite consensus disorder prediction 258 312 - -
Gma01g01961 890 PANTHER FORMIN-LIKE PROTEIN 2 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01961 Gma-Chr1 55093047 55097863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01961 425 880 FH2 protein (formin) Gene Family AT5G67470 71.367 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01961 - - gmx:100806929 1569.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01961 01 55093047 55097863 Gma11g00446 11 3685670 3690895 GST
Gma01g01961 01 55093047 55097863 Gma17g01487 17 14246187 14250519 PCT
Gma01g01961 01 55093047 55097863 Gma05g01061 05 30327054 30331571 PCT
Gma17g01487 17 14246187 14250519 Gma01g01961 01 55093047 55097863 PCT
Gma05g01061 05 30327054 30331571 Gma01g01961 01 55093047 55097863 PCT