Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01956 ATGAGTTGCAACGGGTGCCGCGTCCTTCGAAAGGGTTGCAGCGAGTCTTGTATCCTGCGGCCGTGTCTACAGTGGATCGATACGCCCGAAGCACAAGGCCATGCCACTGTCTTCGTTGCCAAATTCTTTGGCCGTGCCGACCTCATGTCCTTCATTTCCAACGTCCCTGAACCCCAAAGGCCCGCTCTGTTTCAATCTCTGTTGTTCGAAGCGTGTGGAAGAACGGTGAACCCTGTCAACGGTGCTGTTGGGCTTTTATGGACCGGAAACTGGCACGTGTGCCAGGCGGCGGTTGAGACGGTGCTCCGCGGCGGCACCGTCAGGCCCATGCCGGAGCTTCTCGGCCTAGACGCTCCCACTCCCACTGCCGATGACGCTTCCGAAGGGGAAGTTACCTGTACCGACAAGTGGAGAGTCCGAGATCCGAACCCGAATTTCCCGGGAACCCGGTTCCCGGGTTTGAGGTCCGATAAGGCCGGTTCTGGTGGCAAACGCAAGCGATTTGAAGAGCTCGCCAAGCTTCAGACGGCGACGACGGATCTCAATCTCCGGCTGACGCCGAGTTTTCTGCAGAACGCGGCTAGCTACGGCTGCCGGCAGGAAATTCGCTGGCCAGGGTCGCCGTCAATGAATTCCGAGGAGTCCGGGACGACGACGGCGTGCTTGGAGAGCGGGATCGGAGATCACTACGCTCACGACGGAGACCGGAAAGTGCTGAACCTTTTCATTTGA 732 0.5902 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTVRPMPELLGLDAPTPTADDASEGEVTCTDKWRVRDPNPNFPGTRFPGLRSDKAGSGGKRKRFEELAKLQTATTDLNLRLTPSFLQNAASYGCRQEIRWPGSPSMNSEESGTTTACLESGIGDHYAHDGDRKVLNLFI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01956 243 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Gma01g01956 243 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Gma01g01956 243 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 243 - -
Gma01g01956 243 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01956 Gma-Chr1 55016586 55017936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01956 1 242 AS2 family AT3G49940 54.086 1.83e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma01g01956 LOB 6.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01956 - - gmx:100816189 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01956 01 55016586 55017936 Gma11g00450 11 3757934 3759228 GST
Gma01g01956 01 55016586 55017936 Gma10g02437 10 51923030 51924283 PCT
Gma01g01956 01 55016586 55017936 Gma20g01274 20 39450480 39452273 PCT
Gma17g01493 17 14398068 14399519 Gma01g01956 01 55016586 55017936 PCT