Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01951 ATGTCGAAGGCGCGTGTCTACACCGATGTCAATGTCCTTCGCCCCAAGGAGTATTCGGATTACGAGTCTCTCACCCTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGTAAATATAGTGAAGTTTTTGAAGGCATAAATGTCAATAGCAATGAGCGCTGTATAATTAAGATTCTGAAACCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAATATTTGCGGAGGCCCAAATATTGTTAAGCTTCTTGATATTGTCAGAGATCAACATTCGAAAACTCCCAGTTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCTTGGATTACTGCCATTCTCAAGGCATCATGCATAGGGATGTCAAGCCTCATAATGTTATGATAGATCATGAGTTACGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCTTCAAGATACTTTAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGATATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAAGAACCTTTCTTTTATGGTCATGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAATTGAATGCATATCTTAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGACACAGTCGAAAGCCCTGGTCTAAATTCATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAACAGCTAGAGAAGCAATGGCACATCCATATTTCTCTCAGATATACACGACGTCATCAACTTTATCGGAGCTGCACGAAATCTGCACTAACTTTGTCACCATCACGACTAGAACAAACACTGCGATGGGTTCACGTTTAACGCTCCAAAATCCTCATCTTCATGGTGTTTAA 1095 0.3982 MSKARVYTDVNVLRPKEYSDYESLTLQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNICGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQIYTTSSTLSELHEICTNFVTITTRTNTAMGSRLTLQNPHLHGV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01951 364 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01951 364 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01951 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Gma01g01951 364 Gene3D Transferase(Phosphotransferase) domain 1 111 319 - -
Gma01g01951 364 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 327 IPR045216 GO:0004674|GO:0006468
Gma01g01951 364 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01951 364 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Gma01g01951 364 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Gma01g01951 364 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 1 327 - -
Gma01g01951 364 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Gma01g01951 364 SUPERFAMILY Protein kinase-like (PK-like) 10 324 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01951 Gma-Chr1 54960655 54967743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01951 32 327 Core Cell Cycle Gene Families AT1G76540 29.022 2.48e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Gma01g01951 Pkinase 1.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01951 K03097 - gmx:100813528 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01951 01 54960655 54967743 Gma11g00455 11 3804574 3810571 GST
Gma01g01951 01 54960655 54967743 Gma17g01506 17 14853916 14861390 PCT
Gma17g01506 17 14853916 14861390 Gma01g01951 01 54960655 54967743 PCT