Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01945 ATGGCTTATCTCGCCGTCGCCGGTGCCGGATACAGCTCAGTCGCCGGAATCAATAACCGGAGGCCAAATTTTTTCATACCAATTATACCAAACAACACCATTTCAACGCTCTATTCCGTCGCATCTCTGTGCCGGTGCTGCAGAGAACATGGCTTCAGTAGCGCTTCCGAATCCGCTTGGACAGATTTTCCCGTTGAGAACGCGTACGAGCTGTTAGGAGTGTCCGAGACGAGCTCCTTTGACGAGATTAAAGCGTCGTTTCGCAAATTGGCCAAAGAGACTCACCCGGACCTCGCTGAGTCAAGGAACGATTCCACTGCGTCTCGACGATTTGTACAAATTCTGGCTGCCTATGAGattctttcagattctcaaaagagagcccattatgacatgtacctgttgtctcagaaaaaacttatgcaaaggcattctggacagggttcaaaactgcatatttacaaatcacaggctactacattcaaggagatggaagttgttgaatggttaaaatggtacaggttaactataaataatattttggcagaaaagaaggtggtagttggaacaggctattttgatgtacttgagagagatttttattcagctattcatgcagcatactatggtcctgaaattgattccatggagcttcttcctgaCTGCTTTGAGGCTGAGGAGAGGTCCTCCTATGAAACTCCTGAGGTTTTGCACTTAGTTTCAGGACGTGATCTTTTTGGGATGGTTTGCCTAGCCAACAGGGTTCCAGAGATATCAATTACTAACAATGAGAAGTTAACTTCTTTTAGGTCCTTCCATTCAGGCCTGTGTCAATCTATAACACATTTGAATGTCCACAGGAATGCAGAAAGATCAGATGATTTTGAAACTCATCAAGGTCACAGCTCTAAAACTTCAAGTATTGTATCAGATGCATATAGACATCTAGAATTGCACATCAGTGGAAGAGTGGTTGCTACAGCATCTAGGGCACTACCTAGATGCTGTTCTGATGAGATGCAGACAGAAGATACTGAAGATCACATTCATGTGTTCCTTAATTTATATGAAGATCCCAAACATATCAGCAGTGATTTTTGGAAAGATTACCTTGCAAATGGTGCAGTTGGAAGAAGAATTCGTTTGGGAAGCATATCTGGACTTGGGAGCAGTCCAGATGAAGGTTGTTGTTATGTCTACAATGATAAGGGTACAAAGACCCATGTGATTATGAAGCATAGAACATTGATGGTAAAGCATATGCACTGGTATGAAGTGGGTGAGAAAGTTTCAGTTTGTGAATGTAGATGCACTAGAGCACGTTTACCCCCAAGCAAATTTTGGCTATTTGAGCCTCGTTGTGGCTTCCATGACATAGGGGGTTGGTATGTTGAAACATATGGCAAAGATAAGAATGGTCGTACAATGCCATCACAAAGGTTTTGGGATGGCTTGGACTATAGCGAGCAAGCTGACAGAAGACTCCATCCAGCAATAAACTTGTTCAATAGTTACGAAATGACTCTTGGGAGGGATGCTCTGAACCAATATCATGCCTGA 1560 0.3551 MAYLAVAGAGYSSVAGINNRRPNFFIPIIPNNTISTLYSVASLCRCCREHGFSSASESAWTDFPVENAYELLGVSETSSFDEIKASFRKLAKETHPDLAESRNDSTASRRFVQILAAYEILSDSQKRAHYDMYLLSQKKLMQRHSGQGSKLHIYKSQATTFKEMEVVEWLKWYRLTINNILAEKKVVVGTGYFDVLERDFYSAIHAAYYGPEIDSMELLPDCFEAEERSSYETPEVLHLVSGRDLFGMVCLANRVPEISITNNEKLTSFRSFHSGLCQSITHLNVHRNAERSDDFETHQGHSSKTSSIVSDAYRHLELHISGRVVATASRALPRCCSDEMQTEDTEDHIHVFLNLYEDPKHISSDFWKDYLANGAVGRRIRLGSISGLGSSPDEGCCYVYNDKGTKTHVIMKHRTLMVKHMHWYEVGEKVSVCECRCTRARLPPSKFWLFEPRCGFHDIGGWYVETYGKDKNGRTMPSQRFWDGLDYSEQADRRLHPAINLFNSYEMTLGRDALNQYHA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01945 519 CDD DnaJ 67 123 IPR001623 -
Gma01g01945 519 PRINTS DnaJ domain signature 87 102 IPR001623 -
Gma01g01945 519 PRINTS DnaJ domain signature 69 87 IPR001623 -
Gma01g01945 519 PRINTS DnaJ domain signature 106 126 IPR001623 -
Gma01g01945 519 SUPERFAMILY Chaperone J-domain 65 137 IPR036869 -
Gma01g01945 519 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Gma01g01945 519 Gene3D DnaJ domain 58 155 IPR036869 -
Gma01g01945 519 ProSiteProfiles dnaJ domain profile. 67 134 IPR001623 -
Gma01g01945 519 Pfam DnaJ domain 67 131 IPR001623 -
Gma01g01945 519 SMART dnaj_3 66 126 IPR001623 -
Gma01g01945 519 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 47 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01945 Gma-Chr1 54924382 54929012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01945 69 131 C2H2 Transcription Factor Family AT1G74250 45.455 8.66e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01945 - - gmx:100805332 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01945 01 54924382 54929012 Gma11g00462 11 3836534 3841168 GST