Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01943 ATGTTGGAGCTGTGCCGCAAGCCACTGAAGATGTGGTTCGGTGGTGGAGGCAACGACGACGGCCTCCTCTGGCACACAGACCTTAAGCCCCACGCTTCAGGGAACTACTCAATTGCAGTGGTGCAAGCTAATTCATCCTTGGAAGACCAAGCACAAGTATTTACCTCTCCCTCCGCAACCTTTGTTGGTGTATACGACGGTCACGGTGGTCCTGAAGCTTCCCGTTTCATCACCAACCACCTCTTCTCCTTCCTTCGCAAATTCACTACAGAGGAGGGTGGTTTGTCGGAGGAAGTTATAAAGAAGGCGTTCGAGGCAACGGAAGATGAGTTTTTGCGTGTAGTGAGGGAATCATGGATTGCGCGGCCACAGATAGCTTCCGTGGGTTCGTGTTGTCTTCTGGGAGCGATTTCAAAGGGAGTTCTTTATGTTGCTAATCTCGGGGATTCGAGGGCGGTTTTGGGTCGGAAAGCGTTGGAAGGAGAGGTGAATTGTGGTGCTGGTGCTGTGGTGGCAGAGCGTTTGTCCACTGATCATAATGTTGGAGTGGAGAATGTTAGAAAGGAGGTTGAAGCTCTTCACCCTGATGATCCACACATTGTGGTTTGCACTCGTGGAGTTTGGCGAATCAAGGGCATTATTCAGGTCTCAAGATCAATAGGAGATGTTTACCTAAAGAAGCCAGAATTTGACACTAATCCTCTGTTCCAACAATTTGTATGTCCACTATACTTGAGGAGACCTGTAATGACAGCTGAACCATCGATATTGGCGCGTAAATTGAAGGCAGATGATCTGTTTTTGATCTTTGCATCAGACGGACTTTGGGAGCATTTAACTGATGAAGCGGCTGTTGAAATCATCTCCAGAAGTCCCAGAATAGGAATTGCAAAACGATTGGCGAGAGCTGCACTAGAAGAGGTTGCAAAGAAAAGAGAAATGAGGTATGGGGATCTAAGGAAAACAGATAAAGGTCTAAGGCGCCATTTTCATGATGATATTACAGTGATCGTTCTATATCTCGATCATTCAAAAGAATCACAAAATGGTAGATCAAGACGTAAAGGAGTTTATGATTGCATTAATACTCCTATTGATATCTTCTCTGTGAGCTCAGATGAAGCTGATCTTTAA 1134 0.4586 MLELCRKPLKMWFGGGGNDDGLLWHTDLKPHASGNYSIAVVQANSSLEDQAQVFTSPSATFVGVYDGHGGPEASRFITNHLFSFLRKFTTEEGGLSEEVIKKAFEATEDEFLRVVRESWIARPQIASVGSCCLLGAISKGVLYVANLGDSRAVLGRKALEGEVNCGAGAVVAERLSTDHNVGVENVRKEVEALHPDDPHIVVCTRGVWRIKGIIQVSRSIGDVYLKKPEFDTNPLFQQFVCPLYLRRPVMTAEPSILARKLKADDLFLIFASDGLWEHLTDEAAVEIISRSPRIGIAKRLARAALEEVAKKREMRYGDLRKTDKGLRRHFHDDITVIVLYLDHSKESQNGRSRRKGVYDCINTPIDIFSVSSDEADL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01943 377 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 3 376 - -
Gma01g01943 377 SMART PP2C_4 28 339 IPR001932 -
Gma01g01943 377 CDD PP2Cc 42 341 IPR001932 -
Gma01g01943 377 ProSiteProfiles PPM-type phosphatase domain profile. 35 341 IPR001932 -
Gma01g01943 377 Gene3D - 26 352 IPR036457 -
Gma01g01943 377 Pfam Protein phosphatase 2C 57 305 IPR001932 -
Gma01g01943 377 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Gma01g01943 377 SUPERFAMILY PP2C-like 40 343 IPR036457 -
Gma01g01943 377 PANTHER ALPHABET, ISOFORM E-RELATED 3 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01943 Gma-Chr1 54906930 54910141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01943 17 347 PP2C-type Phosphatase Gene Family AT3G51370 53.687 7.15e-137 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01943 - K01102 gmx:100809958 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01943 01 54906930 54910141 Gma11g00464 11 3855400 3859399 GST
Gma01g01943 01 54906930 54910141 Gma10g02449 10 52003770 52007074 PCT
Gma01g01943 01 54906930 54910141 Gma20g01259 20 39356352 39359338 PCT