Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01931 ATGAACACACGAAAAGACATGGACCGGATCAAAGGCCCATGGAGCCCGGAGGAGGACGAGGCTCTGCAGAAGCTGGTGGAGAAACACGGGCCCAGGAACTGGTCCCTCATCAGCAAGTCCATCCCGGGCCGCTCCGGCAAGTCCTGCAGGCTCCGCTGGTGCAACCAGCTGTCCCCCCAGGTGGAGCACCGGGCCTTCACCCACGAAGAGGACGACACCATTATCCGGGCCCATGCCCGCTTCGGCAACAAGTGGGCCACCATAGCCCGCCTCCTCCACGGCAGAACTGACAACGCCATCAAAAACCACTGGAACTCCACCTTGAAGCGCAAGTGCACTTCAACCATGATTGACGACGACAACACTCCCCCGCTCAAAAGATCCCTCAGTGCCGGCGCTGCTATTCCAGTCTCCACTGGACTCTACATGAACCCTCCCACTCCTGGTAGCCCCTCTGGATCAGATGTGAGTGAGTCCAGCGTACTGGTTGCATCCTCCTCACATGTTTTCCGACCCGTGCCTAGAACAGGCGCGGTTCTACCACCCGTAGAAACAACAACGACTTTGTCTTCCAATGACCCTCCAACCTCACTTTCCCTATCCCTCCCCGGTGTTGACTCATCCGAAGTTTCCAATCGAACAACTGAGCCGATTCATGCCGCACCTCCTCCGCCgccacagccacagccacagccacagccGTTGAATACTATCCCTTTGCTCCCAATGATGACGGTGCCCTCGGTTTCTCCGACGGGGATGGCGCCGTTTAATTTTAGCGCAGAGTTTCTGGCGGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATGGAGTTGCACAATCAGAAGAATGGGATGTGTTTTCAGGCTGCGGTGAATGATGGGTTTAGGAACGCTTCGGTGAAGCGTATTGGAATTAGCAGGGTTGATTCGTAA 942 0.5403 MNTRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTHEEDDTIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCTSTMIDDDNTPPLKRSLSAGAAIPVSTGLYMNPPTPGSPSGSDVSESSVLVASSSHVFRPVPRTGAVLPPVETTTTLSSNDPPTSLSLSLPGVDSSEVSNRTTEPIHAAPPPPPQPQPQPQPLNTIPLLPMMTVPSVSPTGMAPFNFSAEFLAVMQEMIRKEVRSYMELHNQKNGMCFQAAVNDGFRNASVKRIGISRVDS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01931 313 CDD SANT 65 108 IPR001005 -
Gma01g01931 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Gma01g01931 313 MobiDBLite consensus disorder prediction 218 237 - -
Gma01g01931 313 Gene3D - 10 62 - -
Gma01g01931 313 SMART sant 10 59 IPR001005 -
Gma01g01931 313 SMART sant 62 110 IPR001005 -
Gma01g01931 313 Pfam Myb-like DNA-binding domain 65 107 IPR001005 -
Gma01g01931 313 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Gma01g01931 313 Gene3D - 64 128 - -
Gma01g01931 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 112 IPR017930 -
Gma01g01931 313 PANTHER MYB PROTEIN-RELATED 3 282 - -
Gma01g01931 313 CDD SANT 13 55 IPR001005 -
Gma01g01931 313 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Gma01g01931 313 MobiDBLite consensus disorder prediction 173 238 - -
Gma01g01931 313 MobiDBLite consensus disorder prediction 181 215 - -
Gma01g01931 313 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Gma01g01931 313 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Gma01g01931 313 PANTHER MYB TRANSCRIPTION FACTOR 3 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01931 Gma-Chr1 54812643 54814057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01931 3 312 MYB Transcription Factor Family AT4G37260 51.906 7.04e-103 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma01g01931 Myb_DNA-binding 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01931 K09422 - gmx:780556 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01931 01 54812643 54814057 Gma11g00475 11 3966831 3968100 GST
Gma17g01543 17 15564381 15566159 Gma01g01931 01 54812643 54814057 PCT
Gma05g00974 05 28455688 28456551 Gma01g01931 01 54812643 54814057 PCT