Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01924 ATGGAACCAGCTTCAGCTGATTCTTCATCTCAACCTACTCCTCCAGCTTCTAATACTGAAGAACAACACTCAACCAAAGTGTCTGGACAACCTGGCAATGCACATGATTCGCAATTGTCGTCACCCACTTCTGGCATATCATCCTGGGCAAGAAATCTGAAATTCCCACAGGCCCTTGGGCTTGGAGCACAACAGAACTCCCAGACCGAAAATGCTGGCATGTCAGCTTTTGCTCGCCTGACTGGAGGGCTTGGATTGCGAACGCCATCAAATGAAACTGCTCCAGTCAAGTCAGGAGCCGAGCAATCTAACTTGATTGAATCCGTCACCAAAGGGTTGGTGGACTCTTCCAAGAGTGCAGTAAAGGCAGTGCAGGTCAAAGCACGCCATATTGTCTCTCAAAATAAACGTAGATACCAGGAAGGTGGATTTGATTTGGACATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATTTTAGCTCTGGAATTTTTGGATACATTGAGGGGTTCTATCGCAATCACATGGATGAAGTGATCAAGTTTTTTGAAACGCATCATAAGGGAAAATACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGACGGATCATTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTCGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTAGTCTTCTTTTGTTTCTTAAGTTCTTCCCAACTGCAGAGGAAGCCATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTTTAGTCCTCCCTAGTCAGATTAGATATGTAAAATACTTTGAACGGACTTTAACACACTTCAATGGAGAAGTCCAACCAGGACGAAGGTGCATGCTAAGAGGGTTTCGGCTTCACAAATGCCCTTATTGGGTTAGACCATCTATTACAATTTCTGATCATACGGGAATTCTTTTTACCACAAGAAAGCATCCCAAAACAAAGGATCTAATGCCAGAAGATTTCTGGATCAGTGTACCAAAGAAAGGAATTGTGGTTTTTGCCCTACCAGGAGAGCCTGGTCTAGCAGAGTTGGTAGGAGACTTCAAAATTCAGTTTCAAGATCGACAGGGAGATTTCTACTGTTGGATGAATACAACGATGACAGAAAACCGAAAATTTTTGGATGGTTCAGATTTTGATGGTTTCGACAAGAGAAAGATCCCTGCTCCAGGATTCAAGGTGGAAGTTGTGATGATAGACTATAATGGCACCCTGCCTGCAAATACAAAATCAAATCCTGCCAGCAAAGGATCTGATGGAAACACAAGCAATGCCCTACCTGGTCCAAAGTCTACTACATCTAATTCAAGTGAGAGTAAAGTCCCTAGAAACGGAGATGATGATGTATTCTCAGACAGCGACGAAGAGGAGACCCGGGATACACAAAGCAATAAAGCTGCAGCTGAGTACAAATTTATGGCACCTCATCAAGTATCTGAGGCAACAAATGACCATGTAGGGATGTTGACACAGAAATCGGATCAGTTGTCACTGCAGCATGAGGAATGCAAGCAAAACGATGCTTCTGAAGAATCACCTACAGATAAACTTCATAAAAATCATACAGGCAATAAGAGTACAAACATGGGATCTGTAGGGGCAAGTGACATCAAGGCAATCGCAGCAGATGCTTCAGTTTTTTCCTTTGGAGATGAAGATTTTGACAGTGATTGA 1821 0.4212 MEPASADSSSQPTPPASNTEEQHSTKVSGQPGNAHDSQLSSPTSGISSWARNLKFPQALGLGAQQNSQTENAGMSAFARLTGGLGLRTPSNETAPVKSGAEQSNLIESVTKGLVDSSKSAVKAVQVKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPGGDFSSGIFGYIEGFYRNHMDEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYFNHKRCVDGKALVLPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFRLHKCPYWVRPSITISDHTGILFTTRKHPKTKDLMPEDFWISVPKKGIVVFALPGEPGLAELVGDFKIQFQDRQGDFYCWMNTTMTENRKFLDGSDFDGFDKRKIPAPGFKVEVVMIDYNGTLPANTKSNPASKGSDGNTSNALPGPKSTTSNSSESKVPRNGDDDVFSDSDEEETRDTQSNKAAAEYKFMAPHQVSEATNDHVGMLTQKSDQLSLQHEECKQNDASEESPTDKLHKNHTGNKSTNMGSVGASDIKAIAADASVFSFGDEDFDSD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01924 606 SMART PTEN_C2_2 321 449 IPR014020 -
Gma01g01924 606 ProSiteProfiles C2 tensin-type domain profile. 323 450 IPR014020 -
Gma01g01924 606 MobiDBLite consensus disorder prediction 455 489 - -
Gma01g01924 606 ProSitePatterns Tyrosine specific protein phosphatases active site. 253 263 IPR016130 GO:0016311|GO:0016791
Gma01g01924 606 MobiDBLite consensus disorder prediction 1 48 - -
Gma01g01924 606 MobiDBLite consensus disorder prediction 543 580 - -
Gma01g01924 606 MobiDBLite consensus disorder prediction 86 102 - -
Gma01g01924 606 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 251 290 IPR000387 GO:0016311|GO:0016791
Gma01g01924 606 CDD PTP_PTEN 147 311 IPR045101 GO:0016791
Gma01g01924 606 MobiDBLite consensus disorder prediction 455 512 - -
Gma01g01924 606 MobiDBLite consensus disorder prediction 83 102 - -
Gma01g01924 606 MobiDBLite consensus disorder prediction 546 571 - -
Gma01g01924 606 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 11 606 - -
Gma01g01924 606 Gene3D Protein tyrosine phosphatase superfamily 122 319 IPR029021 -
Gma01g01924 606 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 11 606 - -
Gma01g01924 606 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 150 316 IPR029021 -
Gma01g01924 606 ProSiteProfiles Phosphatase tensin-type domain profile. 137 316 IPR029023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01924 Gma-Chr1 54763914 54771491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01924 37 606 Protein tyrosine phosphatase (PTP) family AT3G19420 61.735 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01924 K01110 - gmx:100801622 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01924 01 54763914 54771491 Gma11g00481 11 4023319 4030308 GST
Gma01g01924 01 54763914 54771491 Gma10g02488 10 52267111 52276757 PCT
Gma01g01924 01 54763914 54771491 Gma20g01216 20 39010040 39016288 PCT